Sequence of DPV Papaya ringspot virus

Papaya ringspot virus W isolate B9 polyprotein gene, partial cds.

ACC No: JN132432

Dated: 2012-03-16 | Length: 1191 | CRC: 1722311789

                
ID   JN132432; SV 1; linear; genomic RNA; STD; VRL; 1191 BP.
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AC   JN132432;
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DT   02-JAN-2012 (Rel. 111, Created)
DT   16-MAR-2012 (Rel. 112, Last updated, Version 2)
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DE   Papaya ringspot virus W isolate B9 polyprotein gene, partial cds.
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KW   .
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OS   Papaya ringspot virus W
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1191
RX   PUBMED; 22160129.
RA   Abdalla O.A., Ali A.;
RT   "Genetic diversity in the 3'-terminal region of papaya ringspot virus
RT   (PRSV-W) isolates from watermelon in Oklahoma";
RL   Arch. Virol. 157(3):405-412(2012).
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RN   [2]
RP   1-1191
RA   Mohammad O., Ali A.;
RT   ;
RL   Submitted (17-JUN-2011) to the INSDC.
RL   Biological Science, University of Tulsa, 800 S Tucker Dr, Tulsa, OK 74104,
RL   USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1191
FT                   /organism="Papaya ringspot virus W"
FT                   /host="watermelon"
FT                   /isolate="B9"
FT                   /mol_type="genomic RNA"
FT                   /country="USA:Oklahoma"
FT                   /collection_date="2008"
FT                   /db_xref="taxon:12207"
FT   CDS             <1. .1173
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="UniProtKB/TrEMBL:G9FIT8"
FT                   /protein_id="AEW91868.1"
FT                   /translation="AAMIESWGYGELTHQIRRFYQWVLEQAPFNELARQGRAPYVSEVG
FT                   LRRLYTSERGSMDELEAYIDKYFERERGDSPELLVYHESRIADDYQLVCSNNTHVFHQS
FT                   KNEAVDAGLNEKLKEKEKQKEKEKEKQKEKEKDDASDGNDVSTSTKTGERDRDVNVGTS
FT                   GTFTVPRIKSFTDKMILPRIKGKTVLNLNHLLQYNPQQIDISNTRATQSQFEKWYEGVR
FT                   SDYGLNDNEMQVMLNGLMVWCIENGTSPDISGVWVMMDGDTQVDYPIKPLIEHATPSFR
FT                   QIMAHFSNAAEAYIAKRNATERYMPRYGIKRNLTDISLARYAFDFYEVNSKTPDRAREA
FT                   HMQMKAAALRNTSRRMFGMDGSVSNKEENTERHTVEDVNRDMHSLLGMRN"
FT   mat_peptide     <1. .309
FT                   /product="NIb protein"
FT   mat_peptide     310. .1170
FT                   /product="coat protein"
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SQ   Sequence 1191 BP; 399 A; 210 C; 297 G; 285 T; 0 other;

jn132432 Length: 1191  16-MAR-2012  Type: N  Check: 328  ..

       1  gcagcaatga tagagtcatg gggctatggt gagttaacac accagattcg
      51  cagattctac caatgggttc tcgagcaagc tccgttcaat gagttggcga
     101  gacaaggaag ggctccatac gtctcggaag ttggattgag aagattgtac
     151  acgagtgaac gtggatcaat ggatgaatta gaagcgtata tagataaata
     201  ctttgagcgt gaaagggggg actcacccga actactggta taccatgaat
     251  caaggatcgc tgatgattat caacttgttt gtagcaacaa tacacacgtg
     301  tttcatcagt ccaaaaatga agctgtggat gctggtttga acgaaaagct
     351  caaagaaaaa gaaaaacaga aagaaaaaga aaaagaaaaa caaaaagaga
     401  aagaaaaaga cgatgctagt gacggaaatg atgtgtcaac tagcacaaaa
     451  actggagaga gagatagaga tgtcaatgtt gggaccagtg gaactttcac
     501  tgttccaaga atcaaatcat tcactgacaa gatgattcta ccaagaatta
     551  agggaaagac tgttcttaat ttaaatcatc ttcttcagta taatccgcaa
     601  caaattgaca tttctaatac tcgtgccact cagtcacaat ttgaaaagtg
     651  gtacgagggg gtgaggagtg attatggcct taatgataat gaaatgcaag
     701  taatgctgaa tggcttgatg gtttggtgta tcgagaatgg tacatctcca
     751  gacatatctg gtgtctgggt tatgatggat ggggacaccc aagttgatta
     801  tccaatcaag cctttaattg agcatgccac cccgtcattt aggcaaatta
     851  tggctcactt tagtaacgcg gcagaggcat acattgcaaa gaggaatgct
     901  actgagaggt acatgccgcg gtatggaatc aagagaaatt tgactgacat
     951  tagcctcgct agatacgctt tcgatttcta tgaggtgaat tcgaaaacac
    1001  ctgatagggc tcgcgaagct cacatgcaga tgaaagctgc agcgctgcga
    1051  aacactagtc gcagaatgtt tggtatggac ggcagtgtta gtaacaagga
    1101  agaaaacacg gagagacaca cagtggaaga tgtcaataga gacatgcact
    1151  ctctcctggg tatgcgcaac tgaatactcg cgcttgtgtg t