Sequence of DPV Papaya ringspot virus

Papaya ringspot virus W isolate J11 polyprotein gene, partial cds.

ACC No: JN132449

Dated: 2012-03-16 | Length: 1191 | CRC: -108357486

                
ID   JN132449; SV 1; linear; genomic RNA; STD; VRL; 1191 BP.
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AC   JN132449;
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DT   02-JAN-2012 (Rel. 111, Created)
DT   16-MAR-2012 (Rel. 112, Last updated, Version 2)
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DE   Papaya ringspot virus W isolate J11 polyprotein gene, partial cds.
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KW   .
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OS   Papaya ringspot virus W
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1191
RX   PUBMED; 22160129.
RA   Abdalla O.A., Ali A.;
RT   "Genetic diversity in the 3'-terminal region of papaya ringspot virus
RT   (PRSV-W) isolates from watermelon in Oklahoma";
RL   Arch. Virol. 157(3):405-412(2012).
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RN   [2]
RP   1-1191
RA   Mohammad O., Ali A.;
RT   ;
RL   Submitted (17-JUN-2011) to the INSDC.
RL   Biological Science, University of Tulsa, 800 S Tucker Dr, Tulsa, OK 74104,
RL   USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1191
FT                   /organism="Papaya ringspot virus W"
FT                   /host="watermelon"
FT                   /isolate="J11"
FT                   /mol_type="genomic RNA"
FT                   /country="USA:Oklahoma"
FT                   /collection_date="2009"
FT                   /db_xref="taxon:12207"
FT   CDS             <1. .1173
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="UniProtKB/TrEMBL:G9FIV5"
FT                   /protein_id="AEW91885.1"
FT                   /translation="AAMIESWGYGELTHQIRRFYQWVLEQAPFNELAKQGRAPYVSEVG
FT                   LRRLYTSERGSMDELEAYIDKYFERERGDSPELLVYHESRSTDDYQLICSNNTHVFHQS
FT                   KNEAVDAGLNEKLKEKEKQKEKEKEKQKEKEKDDASDGNDVSTSTKTGERDRDVNVGTS
FT                   GTFTVPRIKSFTDKMILPRIKGKTVLNLNHLLQYNPQQIDISNTRATQSQFEKWYEGVR
FT                   NDYGLDDNEMQVMLNGLMVWCIENGTSPDISGVWVMMDGETQVDYPIKPLIEHATPSFR
FT                   QIMAHFSNAAEAYIAKRNATERYMPRYGIKRNLTDISLARYAFDFYEVNSKTPDRAREA
FT                   HMQMKAAALRNTSRRMFGMDGSVSNKEENTERHTVEDVNRDMHSLLGMRN"
FT   mat_peptide     <1. .309
FT                   /product="NIb protein"
FT   mat_peptide     310. .1170
FT                   /product="coat protein"
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SQ   Sequence 1191 BP; 406 A; 202 C; 294 G; 289 T; 0 other;

jn132449 Length: 1191  16-MAR-2012  Type: N  Check: 53  ..

       1  gcagcaatga tagagtcatg gggttatggt gagttaacac accagattcg
      51  cagattctac cagtgggttc tcgagcaagc tccgttcaat gagttagcga
     101  aacaaggaag ggctccatac gtatcggagg ttggattgag aagattgtac
     151  acaagtgaac gtggatcaat ggatgaattg gaagcgtata tagataaata
     201  ctttgagcgt gagaggggag actcacccga actactggtg taccatgaat
     251  caaggagcac tgatgattat caacttattt gtagcaacaa tacacacgtg
     301  tttcatcagt ccaaaaatga agctgtggat gctggtttaa acgaaaagct
     351  caaagaaaaa gaaaaacaga aagaaaaaga aaaagaaaaa caaaaagaga
     401  aagaaaaaga cgatgctagt gacggaaatg atgtgtcaac tagcacaaaa
     451  actggagaga gagatagaga tgtcaatgtt gggaccagtg gaactttcac
     501  tgttccaaga atcaaatcat ttactgacaa gatgattcta ccaagaatta
     551  agggaaagac tgtccttaat ttaaatcatc ttcttcagta taatccgcaa
     601  caaattgata tttctaatac tcgtgccact cagtcacaat ttgagaagtg
     651  gtatgagggg gtgaggaatg attatggcct tgatgataat gaaatgcaag
     701  taatgctaaa tggcttgatg gtttggtgta tcgagaatgg tacatctcca
     751  gacatatctg gtgtctgggt tatgatggat ggggaaaccc aagttgatta
     801  tccaatcaag cctttaattg agcatgctac cccgtcattt aggcaaatta
     851  tggctcactt tagtaacgcg gcagaagcat atattgcaaa gagaaatgct
     901  actgagaggt acatgccgcg gtatggaatc aagagaaatt tgactgacat
     951  tagcctcgca agatacgctt tcgatttcta tgaggtgaat tcgaaaacac
    1001  ctgatagggc tcgcgaagct cacatgcaga tgaaagctgc agcgctgcga
    1051  aacactagtc gcagaatgtt tggtatggac ggtagtgtta gtaacaagga
    1101  agaaaacacg gagagacaca cagtggaaga tgtcaataga gacatgcact
    1151  ctctcctggg tatgcgcaac tgaatactcg cgcttgtgtg t