Sequence of DPV Papaya ringspot virus

Papaya ringspot virus W isolate T15 polyprotein gene, partial cds.

ACC No: JN132471

Dated: 2012-03-16 | Length: 1188 | CRC: -38537596

                
ID   JN132471; SV 1; linear; genomic RNA; STD; VRL; 1188 BP.
XX
AC   JN132471;
XX
DT   02-JAN-2012 (Rel. 111, Created)
DT   16-MAR-2012 (Rel. 112, Last updated, Version 2)
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DE   Papaya ringspot virus W isolate T15 polyprotein gene, partial cds.
XX
KW   .
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OS   Papaya ringspot virus W
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1188
RX   PUBMED; 22160129.
RA   Abdalla O.A., Ali A.;
RT   "Genetic diversity in the 3'-terminal region of papaya ringspot virus
RT   (PRSV-W) isolates from watermelon in Oklahoma";
RL   Arch. Virol. 157(3):405-412(2012).
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RN   [2]
RP   1-1188
RA   Mohammad O., Ali A.;
RT   ;
RL   Submitted (17-JUN-2011) to the INSDC.
RL   Biological Science, University of Tulsa, 800 S Tucker Dr, Tulsa, OK 74104,
RL   USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1188
FT                   /organism="Papaya ringspot virus W"
FT                   /host="watermelon"
FT                   /isolate="T15"
FT                   /mol_type="genomic RNA"
FT                   /country="USA:Oklahoma"
FT                   /collection_date="2009"
FT                   /db_xref="taxon:12207"
FT   CDS             <1. .1170
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="UniProtKB/TrEMBL:G9FIX7"
FT                   /protein_id="AEW91907.1"
FT                   /translation="AAMIESWGYGELTHQIRRFYQWVLEQAPFNELAKQGRAPYVSEVG
FT                   LRRLYTSERGSMDELEAYIDKYFERERGDSPELLVYHESRSTDDYQLVCSNTHVFHQSK
FT                   NEAVDAGLNEKLKEKEKQKEKEKEKQKEKEKDDASDGNDVSASTKTGERDRDVNVGTSG
FT                   TFTVPRIKSFTDKMVLPRIKGKTVLNLNHLLQYNPQQIDISNTRATQSQFEKWYEGVRN
FT                   DYGLNDNEMQVMLNGLMVWCIENGTSPDISGVWVMMDGETQVDYPIKPLIEHATPSFRQ
FT                   IMAHFSNAAEAYIAKRNATERYMPRYGIKRNLTDISLARYAFDFYEVNSKTPDRAREAH
FT                   MQMKAAALRNTSRRMFGMDGSVSNKEENPERHTVEDVNRDMHSLLGMRN"
FT   mat_peptide     <1. .306
FT                   /product="NIb protein"
FT   mat_peptide     307. .1167
FT                   /product="coat protein"
FT   3'UTR           1171. .>1188
XX
SQ   Sequence 1188 BP; 406 A; 203 C; 288 G; 291 T; 0 other;

jn132471 Length: 1188  16-MAR-2012  Type: N  Check: 8830  ..

       1  gcagcaatga tagagtcatg gggttatggt gagttaacac accagattcg
      51  caggttctac caatgggttc tcgaacaagc tccattcaat gaattagcta
     101  aacaaggaag ggctccatac gtctcagaag ttggattgag aagactgtac
     151  acaagtgaac gtggatcaat ggatgaattg gaagcgtata tagataaata
     201  ctttgagcgt gagaggggag actcacccga actactagta taccacgaat
     251  caaggagcac tgatgattat caacttgttt gtagcaatac acacgtgttt
     301  catcagtcca aaaatgaagc tgtggatgct ggtttgaacg aaaagctcaa
     351  agaaaaagaa aaacagaaag aaaaagaaaa agaaaaacaa aaagagaaag
     401  aaaaagatga tgctagtgac ggaaacgatg tgtcagctag cacaaaaact
     451  ggagagagag atagagatgt caatgttggg accagtggaa ctttcactgt
     501  tccaagaatc aaatcattta ctgacaagat ggttctacca agaattaagg
     551  gaaagactgt ccttaattta aatcatcttc ttcagtataa tccgcaacaa
     601  attgacattt ctaatactcg tgccactcaa tcacaatttg agaagtggta
     651  tgagggggtg agaaatgatt atggccttaa tgataatgaa atgcaagtga
     701  tgttaaatgg tttgatggtt tggtgtatcg agaatggtac atctccagac
     751  atatctggtg tttgggttat gatggatggg gaaacccaag ttgattatcc
     801  aatcaagcct ctaattgagc atgctacccc gtcatttagg caaattatgg
     851  ctcactttag taacgcggca gaagcatata ttgcaaagag aaatgctact
     901  gagaggtaca tgccgcggta tggaatcaag agaaatttga ctgacattag
     951  cctcgctaga tatgctttcg atttctatga ggtgaattcg aaaacacctg
    1001  atagggctcg cgaagctcat atgcagatga aagctgcagc gctgcgaaac
    1051  actagtcgca gaatgtttgg tatggacggc agtgttagta acaaggaaga
    1101  aaacccggag agacacacag tggaagatgt caatagagac atgcactctc
    1151  tcctgggtat gcgcaactga atactcgcgc ttgtgtgt