Sequence of DPV Pea necrotic yellow dwarf virus

Pea necrotic yellow dwarf virus segment DNA-S, complete sequence.

ACC No: JN133279

Dated: 2012-07-02 | Length: 983 | CRC: -872659278

                
ID   JN133279; SV 1; circular; genomic DNA; STD; VRL; 983 BP.
XX
AC   JN133279;
XX
DT   02-JUL-2012 (Rel. 113, Created)
DT   02-JUL-2012 (Rel. 113, Last updated, Version 1)
XX
DE   Pea necrotic yellow dwarf virus segment DNA-S, complete sequence.
XX
KW   .
XX
OS   Pea necrotic yellow dwarf virus
OC   Viruses; ssDNA viruses; Nanoviridae; Nanovirus; unclassified Nanovirus.
XX
RN   [1]
RP   1-983
RA   Grigoras I., Gronenborn B., Vetten H.-J.;
RT   "Pea necrotic yellow dwarf virus";
RL   Unpublished.
XX
RN   [2]
RP   1-983
RA   Grigoras I.;
RT   ;
RL   Submitted (18-JUN-2011) to the INSDC.
RL   Institut des Sciences du Vegetal, Centre National de la Recherche
RL   Scientifique, Gif sur Yvette 91198, France
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .983
FT                   /organism="Pea necrotic yellow dwarf virus"
FT                   /segment="DNA-S"
FT                   /host="Pisum sativum"
FT                   /strain="Germany"
FT                   /isolate="Drohndorf-15"
FT                   /mol_type="genomic DNA"
FT                   /country="Germany:Drohndorf"
FT                   /isolation_source="plant tissue"
FT                   /collected_by="H.-J. Vetten"
FT                   /collection_date="01-Jul-2009"
FT                   /identified_by="I. Grigoras and H.-J. Vetten"
FT                   /db_xref="taxon:753670"
FT   stem_loop       join(963. .983,1. .14)
FT                   /note="part of replication origin"
FT   misc_feature    join(977. .983,1. .2)
FT                   /note="conserved nonanucleotide at replication origin"
FT   TATA_signal     223. .229
FT   CDS             262. .774
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /protein_id="AFK65511.1"
FT                   /translation="MAPFAQWAVKKRRTPRGGARRYSKAVAPTTKVAFHQSTVLNKEDI
FT                   VGFEIKPPDITRYKIRRVVLFCTFRMPPGELLNYLIVKTNSPLLNWGAVFTAPGLMVKE
FT                   QFQDMVTIVTGGKLEGSGVAGSTSLKAMRKVVNLGAGVAQTQHMYVVFFSSDSMKAILE
FT                   GRVYVAI"
FT   polyA_signal    815. .821
XX
SQ   Sequence 983 BP; 277 A; 173 C; 228 G; 305 T; 0 other;

jn133279 Length: 983  02-JUL-2012  Type: N  Check: 253  ..

       1  acccccgtgc caggatcagg ggatcacttt aaatacatct agaccgttca
      51  tttaaacgac acgtggacgc tcaagattaa ttcttgagtg ggaatcaatt
     101  attggacttt ctctttctta ctttaaggaa agcaaactgc tttccccgac
     151  attactttcc atgaatccgc gttaaatgct tttgattctt tgcttcggga
     201  cgaagcaaag tatttaattg cctataaata ggcttcgtca ttatgtattg
     251  ttcattatca aatggcgccg tttgctcagt gggctgtgaa gaagagaaga
     301  acaccacgtg gtggtgcacg gcgctattcc aaagctgtgg ctccgaccac
     351  caaggttgcg tttcatcaaa gcacagttct gaacaaggag gatatcgttg
     401  gttttgaaat aaaacctccg gatatcacca gatacaaaat acgtagagta
     451  gtattatttt gtacgtttag gatgcctcca ggagagttgt taaattattt
     501  aattgtgaaa accaattcac ccctgttgaa ttggggggct gtgtttaccg
     551  ctccagggtt aatggtgaaa gagcagtttc aggatatggt aactatagtt
     601  accggtggta agttagaagg ttcaggtgta gctgggagta catcgctgaa
     651  ggcgatgagg aaggttgtta atttaggtgc tggtgttgct caaacccagc
     701  acatgtatgt tgtatttttt agcagtgaca gtatgaaggc catattagaa
     751  ggaagggtat atgtggcaat ataattgtat taatgtgttt gaagaaaata
     801  tcaaacactc attgaaataa aatcatttcc ctgctattat ttttaaatac
     851  atcgcgtagc gatattcttt gggccgtaag gcccaataag gacttatgtc
     901  caattataat tttgttattg ggatcaaata gtgtcatttg gcactatttg
     951  atcccgggac agcctggcac ggggcttagt att