Sequence of DPV Pea necrotic yellow dwarf virus

Pea necrotic yellow dwarf virus segment DNA-N, complete sequence.

ACC No: JN133282

Dated: 2012-07-02 | Length: 993 | CRC: -666359044

                
ID   JN133282; SV 1; circular; genomic DNA; STD; VRL; 993 BP.
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AC   JN133282;
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DT   02-JUL-2012 (Rel. 113, Created)
DT   02-JUL-2012 (Rel. 113, Last updated, Version 1)
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DE   Pea necrotic yellow dwarf virus segment DNA-N, complete sequence.
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KW   .
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OS   Pea necrotic yellow dwarf virus
OC   Viruses; ssDNA viruses; Nanoviridae; Nanovirus; unclassified Nanovirus.
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RN   [1]
RP   1-993
RA   Grigoras I., Gronenborn B., Vetten H.-J.;
RT   "Pea necrotic yellow dwarf virus";
RL   Unpublished.
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RN   [2]
RP   1-993
RA   Grigoras I.;
RT   ;
RL   Submitted (18-JUN-2011) to the INSDC.
RL   Institut des Sciences du Vegetal, Centre National de la Recherche
RL   Scientifique, Gif sur Yvette 91198, France
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FH   Key             Location/Qualifiers
FH
FT   source          1. .993
FT                   /organism="Pea necrotic yellow dwarf virus"
FT                   /segment="DNA-N"
FT                   /host="Pisum sativum"
FT                   /strain="Germany"
FT                   /isolate="Drohndorf-15"
FT                   /mol_type="genomic DNA"
FT                   /country="Germany:Drohndorf"
FT                   /isolation_source="plant tissue"
FT                   /collected_by="H.-J. Vetten"
FT                   /collection_date="01-Jul-2009"
FT                   /identified_by="I. Grigoras and H.-J. Vetten"
FT                   /db_xref="taxon:753670"
FT   stem_loop       join(973. .993,1. .14)
FT                   /note="part of replication origin"
FT   misc_feature    join(987. .993,1. .2)
FT                   /note="conserved nonanucleotide at replication origin"
FT   TATA_signal     289. .295
FT   CDS             331. .792
FT                   /codon_start=1
FT                   /product="putative nuclear shuttle protein"
FT                   /protein_id="AFK65514.1"
FT                   /translation="MGDWFASPLKTCSHVLDFPSLAGNPQQAFRCCDTMKGKLEEPRKV
FT                   LLASCSVSFNGSFYGGNRNVRGRIQISMLEDDGVFRPIGFLPIGGYLYHNDYGYYEGQK
FT                   TFMLEMESPYLRKDEDYERPFTVTVINDNGLDVSCDLKVVVVHTMRIKV"
FT   polyA_signal    805. .814
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SQ   Sequence 993 BP; 265 A; 182 C; 231 G; 315 T; 0 other;

jn133282 Length: 993  02-JUL-2012  Type: N  Check: 9557  ..

       1  acccccgtgc caggatcagg ggatcacttt aaatacatct cgaccgttca
      51  tttgaatgac acgtgtatgc tcaagattaa ttcttgagtg ggaagggaat
     101  ataaggcttt taaaatacta attcattaaa tgacgtggac aattcttatt
     151  ggttgatagt tagtgcgtta ctttccaatg gtttgctttc catcgcacta
     201  acttagcgtg tccgagacgc gtaattatgc ttgggcccaa agtaaagcac
     251  agtgcttctt ctttccagga agcttcctgg aattctatta taaataggac
     301  atcatcgtct tcatttttca tatcagaaaa atgggtgact ggtttgcgag
     351  tccgcttaaa acatgttctc atgttttaga tttcccgagt ctcgctggaa
     401  atcctcaaca ggctttcagg tgttgtgaca ccatgaaagg taaattggaa
     451  gaacccagga aggtgttgct tgcaagttgc agtgtcagtt ttaatggaag
     501  cttctacggc ggtaaccgga atgttcgcgg acgaattcag atatctatgt
     551  tggaagacga cggcgtcttc cggccaatcg gatttcttcc aatcggtgga
     601  tacctgtatc ataacgacta tgggtattat gaaggtcaga agaccttcat
     651  gctggagatg gagtcgccat acttgaggaa ggatgaagac tacgaaaggc
     701  ctttcactgt aaccgttatc aatgataacg gattagatgt atcttgtgac
     751  ctcaaggttg ttgttgtaca tacgatgcgt atcaaggtgt aattcatgat
     801  tattaataaa taaatattta tttatgtttg tttaatactc ttgctattgt
     851  ttttaaattc cacgcgaagc ggtatgcttt gggctggaag gcccaataag
     901  gacttaggcc caattttatt tgtgttgttg ggatcaaata gtgtcatttg
     951  gcactatttg atcccgggac agcctggcac ggggcttagt att