Sequence of DPV Pea necrotic yellow dwarf virus

Pea necrotic yellow dwarf virus segment DNA-U4, complete sequence.

ACC No: JN133285

Dated: 2012-07-02 | Length: 979 | CRC: 1512314738

                
ID   JN133285; SV 1; circular; genomic DNA; STD; VRL; 979 BP.
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AC   JN133285;
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DT   02-JUL-2012 (Rel. 113, Created)
DT   02-JUL-2012 (Rel. 113, Last updated, Version 1)
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DE   Pea necrotic yellow dwarf virus segment DNA-U4, complete sequence.
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KW   .
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OS   Pea necrotic yellow dwarf virus
OC   Viruses; ssDNA viruses; Nanoviridae; Nanovirus; unclassified Nanovirus.
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RN   [1]
RP   1-979
RA   Grigoras I., Gronenborn B., Vetten H.-J.;
RT   "Pea necrotic yellow dwarf virus";
RL   Unpublished.
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RN   [2]
RP   1-979
RA   Grigoras I.;
RT   ;
RL   Submitted (18-JUN-2011) to the INSDC.
RL   Institut des Sciences du Vegetal, Centre National de la Recherche
RL   Scientifique, Gif sur Yvette 91198, France
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FH   Key             Location/Qualifiers
FH
FT   source          1. .979
FT                   /organism="Pea necrotic yellow dwarf virus"
FT                   /segment="DNA-U4"
FT                   /host="Pisum sativum"
FT                   /strain="Germany"
FT                   /isolate="Drohndorf-15"
FT                   /mol_type="genomic DNA"
FT                   /country="Germany:Drohndorf"
FT                   /isolation_source="plant tissue"
FT                   /collected_by="H.-J. Vetten"
FT                   /collection_date="01-Jul-2009"
FT                   /identified_by="I. Grigoras and H.-J. Vetten"
FT                   /db_xref="taxon:753670"
FT   stem_loop       join(962. .979,1. .11)
FT                   /note="part of replication origin"
FT   misc_feature    join(973. .979,1. .2)
FT                   /note="conserved nonanucleotide at replication origin"
FT   TATA_signal     285. .291
FT   CDS             366. .677
FT                   /codon_start=1
FT                   /product="U4 protein"
FT                   /protein_id="AFK65517.1"
FT                   /translation="MERRFIFFFLLVLTVLNSSFVMNLILGYVLGVLLVKNIPGLRAML
FT                   VGERDVEIKSEDDTFVEGVAEDVRDHLKTLGLDVKVEGEDLEYLQSLWKELRNHAVNM"
FT   polyA_signal    741. .746
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SQ   Sequence 979 BP; 267 A; 154 C; 215 G; 343 T; 0 other;

jn133285 Length: 979  02-JUL-2012  Type: N  Check: 9533  ..

       1  acccccctcc cgggatcaga ggtttcattt ggaatgaatc tcagccgttc
      51  attgtggcta ccacgtggac gatcaggatc tgtgattcgc gaagcgaatc
     101  tgacggaaga ttgtccacta cgctttaaat ggttacttgt ttttgattgg
     151  tctaaattgc ggctggaccc actatgcttt ccatgtgctt tccagcacat
     201  ggcagctaat aaatgggaat taatttaata acaattaaat tgaaaaatac
     251  tggcgttctg ggtacgctat ctcatttggc tttctataaa agccaggctt
     301  cattggatcc ttcattgcta agaaattgtt tctctctcta catctttaga
     351  gagagatagt ccgctatgga acgtcggttc attttcttct tcctcctggt
     401  tcttacggtg ttaaattcat cctttgtgat gaatttaatt ctgggttatg
     451  ttcttggtgt attattagtg aagaatatcc cagggttgcg agctatgctc
     501  gtcggtgaaa gagatgttga aatcaagtct gaagatgata cgttcgttga
     551  aggtgttgct gaagatgttc gtgatcatct gaagacactg ggcttggatg
     601  tcaaggttga aggtgaagac ctggagtatt tacagtcttt atggaaagag
     651  ttaagaaatc atgcagttaa tatgtaatat gtaaattacc gtgaggtaag
     701  ttatattgta tatttcacct agcgtgtaat cgtttggaat aataaaataa
     751  tattatttta tgttattggg cctaagtcct tattgggcct tgtattgtcc
     801  attacacgtt tgtatgtaac ccaattaata ataacgatat tgctattatt
     851  ttaataagat acgcgaagcg atatgtttaa ttaattttgt ttaattaaac
     901  taataggcat atttaattat gtatggggat caaatgtact atttgatccc
     951  gtgatgacgt agggaggggg cttagtatt