Sequence of DPV Turnip vein-clearing virus
Turnip vein-clearing virus strain NZ-587, complete genome.
ACC No: JN205074
Dated: 2012-07-13 | Length: 6311 | CRC: 1246895579
ID JN205074; SV 1; linear; genomic RNA; STD; VRL; 6311 BP.
XX
AC JN205074;
XX
DT 13-JUL-2012 (Rel. 113, Created)
DT 13-JUL-2012 (Rel. 113, Last updated, Version 1)
XX
DE Turnip vein-clearing virus strain NZ-587, complete genome.
XX
KW .
XX
OS Turnip vein-clearing virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Virgaviridae;
OC Tobamovirus.
XX
RN [1]
RP 1-6311
RA Chavan R.R., Pearson M.N., Cohen D., Blouin A.G.;
RT "Characterization of the complete genome of a Turnip vein clearing virus
RT isolate from Plantago major L. from New Zealand";
RL Unpublished.
XX
RN [2]
RP 1-6311
RA Chavan R.R., Pearson M.N.;
RT ;
RL Submitted (04-JUL-2011) to the INSDC.
RL School of Biological Sciences, University of Auckland, Thomas Building,
RL Private Bag 92019, Symonds Street, Auckland, North Island 1142,, New
RL Zealand
XX
FH Key Location/Qualifiers
FH
FT source 1. .6311
FT /organism="Turnip vein-clearing virus"
FT /host="Plantago major"
FT /strain="NZ-587"
FT /isolate="TP9 271.1"
FT /mol_type="genomic RNA"
FT /country="New Zealand"
FT /collected_by="D. Cohen and A.G. Blouin"
FT /collection_date="09-Feb-2010"
FT /note="subgroup: 3"
FT /db_xref="taxon:29272"
FT 5'UTR 1. .67
FT CDS 68. .4873
FT /codon_start=1
FT /transl_except=(pos:3389. .3391,aa:Tyr)
FT /product="RNA replicase"
FT /note="contains RNA polymerase; translated by readthrough"
FT /protein_id="AEU04724.1"
FT /translation="MAQFQQTIDMQTLQAAAGRNSLVNDLASRRVYDNAVEELNARSRR
FT PKVHFSKAVSTEQTLVATNAYPEFEISFTHTQSAVHSLAGGLRSLELEYLMMQVPFGSL
FT TYDIGGNFSAHLFKGRDYVHCCMPNLDVRDIARHEGHKEAIYSYVNRLKRQQRPVPEYQ
FT RAAFNNYAENPHFVHCDKPFQQCELTTANGTDTYAVALHSIYDIPVDEFGPALLRKNVK
FT TCFAAFHFHENMLLECDTVTLDEIGATFQRAGDNLSFFFHNESTLNYTHSFSNIIKYVC
FT KTFFPASQRFVYHKEFLVTRVNTWYCKFTRVDTFTLFRGVYHNNVDCEEFYKAMDDAWH
FT YKKTLAMLNAERTIFKDNAALNFWFPKVRDMVIVPLFDASITTGRMSRREVMVNKDFVY
FT TVLNHIKTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDTDKAILGPLAMTFFLIT
FT KLGHVQDEIILKRFQKFDRTANELIWTSLCDALMGVIPSVKETLVRGGFVKVAEQALEI
FT KIPDLYCTFTDRLVLQYKKAEEFQSCDLSKPLEESEKYYNALSELSVLENLDSFDLEAF
FT KTLCQQKNVDPDMAAKVVVAIMKCELTLPFKKPTEEEISESLKTEEGSSAEHKEVLSLQ
FT NDAPFPCVKNLVEGSVPAYGMCPKGGGFDKLDVDIADFHLKSVDAVKRGTMMSAVYTGS
FT IKVQQMKNYIDYLSASLSATVSNLCKVLRDVHGVDPESQEKSGVWDVRRGRWLLKPNAK
FT SHAWGVAEDANHKLVIVLLNWDDGKPVCDETWFRVAVSSDSLIYSDMGKLKTLTSCSPN
FT GEPPEPNAKVILVDGVPGCGKTKEIIEKVNFSEDLVLVPGKEASKMIIRRANQAGVIRA
FT DKDNVRTVDSFLMHPSRRVFKRLFIDEGLMLHTGCVNFLLLLSQCDVAYVYGDTQQIPF
FT ICRVANFPYPAHFAKLVADEKEVRRVTLRCPADVTYFLNKKYDGAVMCTSAVERSVKAE
FT VVRGKGALNPITLPLEGKVLTFTQADKFELLEKGYKDVNTVHEVQGETYEKTAIVRLTS
FT TPLEIISRASPHVLVALTRHTTRCKYYTVVLDPMVNVISEMEKLSNFLLDMYRVEAGIQ
FT YQLQIDAVFKGTELVCSGRPSGDWRDMQFYYDTLLPGNSTILNEFDAVTMNLRDISLNV
FT KDCRIDFSKSVQLPKEQPIFLKPKIRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTID
FT IEDTASLVVEKFWDSYIGKEYSGTNEMTMTRESFSRWLSKQESSTVGQLADFNFVDLPA
FT VDEYKHMIKSQPKQKLDLSIQDEYPALQTIVYHSKKINAIFGPMFSELTRMLLERIDSS
FT KFLFYTRKTPAQIEDFFSDLDSTQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDE
FT WLAEVWKQGHRKTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTIIIAACLSSMIPMNKVI
FT KAAFCGDDSLIYIPKGLDLPDIQAGANLMWNFEAKLFRKKYGYFCGRYVIHHDRGAIVY
FT YDPLKLISKLGCKHIRDVVHLEELRESLCDVASNLNNCAYFSQLDEAVAEVHKTAVGGS
FT FAFCSIIKYLSDKRLLRDLFFV"
FT CDS 68. .3391
FT /codon_start=1
FT /product="RNA replicase component"
FT /note="contains capping methyltransferase and RNA helicase
FT domains"
FT /protein_id="AEU04725.1"
FT /translation="MAQFQQTIDMQTLQAAAGRNSLVNDLASRRVYDNAVEELNARSRR
FT PKVHFSKAVSTEQTLVATNAYPEFEISFTHTQSAVHSLAGGLRSLELEYLMMQVPFGSL
FT TYDIGGNFSAHLFKGRDYVHCCMPNLDVRDIARHEGHKEAIYSYVNRLKRQQRPVPEYQ
FT RAAFNNYAENPHFVHCDKPFQQCELTTANGTDTYAVALHSIYDIPVDEFGPALLRKNVK
FT TCFAAFHFHENMLLECDTVTLDEIGATFQRAGDNLSFFFHNESTLNYTHSFSNIIKYVC
FT KTFFPASQRFVYHKEFLVTRVNTWYCKFTRVDTFTLFRGVYHNNVDCEEFYKAMDDAWH
FT YKKTLAMLNAERTIFKDNAALNFWFPKVRDMVIVPLFDASITTGRMSRREVMVNKDFVY
FT TVLNHIKTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDTDKAILGPLAMTFFLIT
FT KLGHVQDEIILKRFQKFDRTANELIWTSLCDALMGVIPSVKETLVRGGFVKVAEQALEI
FT KIPDLYCTFTDRLVLQYKKAEEFQSCDLSKPLEESEKYYNALSELSVLENLDSFDLEAF
FT KTLCQQKNVDPDMAAKVVVAIMKCELTLPFKKPTEEEISESLKTEEGSSAEHKEVLSLQ
FT NDAPFPCVKNLVEGSVPAYGMCPKGGGFDKLDVDIADFHLKSVDAVKRGTMMSAVYTGS
FT IKVQQMKNYIDYLSASLSATVSNLCKVLRDVHGVDPESQEKSGVWDVRRGRWLLKPNAK
FT SHAWGVAEDANHKLVIVLLNWDDGKPVCDETWFRVAVSSDSLIYSDMGKLKTLTSCSPN
FT GEPPEPNAKVILVDGVPGCGKTKEIIEKVNFSEDLVLVPGKEASKMIIRRANQAGVIRA
FT DKDNVRTVDSFLMHPSRRVFKRLFIDEGLMLHTGCVNFLLLLSQCDVAYVYGDTQQIPF
FT ICRVANFPYPAHFAKLVADEKEVRRVTLRCPADVTYFLNKKYDGAVMCTSAVERSVKAE
FT VVRGKGALNPITLPLEGKVLTFTQADKFELLEKGYKDVNTVHEVQGETYEKTAIVRLTS
FT TPLEIISRASPHVLVALTRHTTRCKYYTVVLDPMVNVISEMEKLSNFLLDMYRVEAGIQ
FT "
FT CDS 4876. .5679
FT /codon_start=1
FT /product="movement protein"
FT /note="intercellular transport of virus"
FT /protein_id="AEU04726.1"
FT /translation="MSIVSYEPKVSDFLNLSKKEEILPKALTRLKTVSISTKDIISVKE
FT SETLCDIDLLINVPLDKYRYVGILGAVFTGEWLVPDFVKGGVTISVIDKRLVNSKECVI
FT GTYRAAAKSKRFQFKLVPNYFVSTADAKRKPWQVHVRIQDLKIEAGWQPLALEVVSVAM
FT VTNNVVMKGLREKVVAINDPDVEGFEGVVDEFVDSVAAFKAVDNFRKRKKKVEEKGVVS
FT KYKYRPEKYAGPNSFNFKEENVLQHYEPESVPVFRSGVGRAHTNA"
FT CDS 5603. .6076
FT /codon_start=1
FT /product="coat protein"
FT /protein_id="AEU04727.1"
FT /translation="MSYNITNPNQYQYFAAVWAEPIPMLNQCISALSQSYQTQAARDTV
FT RQQFSNLLSAVVTPSQRFPETGSRVYVNSAVIKPLYEALMKSFDTRNRIIETEEESRPS
FT ASEVANATQRVDDATVAIRSQIQLLLSELSSGHGYMNRAEFEALLPWTTAPAT"
XX
SQ Sequence 6311 BP; 1827 A; 1208 C; 1569 G; 1707 T; 0 other;
jn205074 Length: 6311 13-JUL-2012 Type: N Check: 1675 ..
1 gtttagtttt attgcaacaa caacaacaaa ttacaataac aacaaacaaa
51 atacaaacaa caacaacatg gcacaatttc aacaaacaat tgacatgcaa
101 actctccaag ctgctgcggg acgcaacagt ttggtgaatg atttggcatc
151 tcgtcgcgtt tatgataacg cggtcgagga gctgaatgcc cgttccaggc
201 gtcccaaggt ccatttctcc aaagcagtgt ctacggaaca gacgctggtt
251 gcgacaaacg cgtatccgga gttcgagatt tcctttactc atacgcaatc
301 ggcagtacac tccttagctg gaggccttcg atcgctcgag ttggagtatc
351 tcatgatgca agttccattc ggttctctca cgtacgatat cggcggtaac
401 ttttctgcgc accttttcaa agggcgtgac tacgttcact gctgtatgcc
451 aaatctggat gtacgtgaca ttgctcgcca cgagggacac aaagaagcta
501 tttacagtta cgtaaatcgt ctgaaaaggc agcaacgtcc tgtacctgaa
551 taccagaggg cagctttcaa caactacgct gagaacccgc actttgtcca
601 ttgcgacaaa ccttttcaac agtgtgaatt gacgacggcg aatggtactg
651 atacctacgc tgtagctctc cacagcattt acgatatccc tgttgatgag
701 ttcggtcctg cgctactcag gaaaaatgtg aaaacttgtt tcgcggcctt
751 ccacttccat gagaatatgc ttcttgagtg tgatacagtc acactcgatg
801 aaatcggagc tacctttcag agggccggtg ataacttgag ttttttcttt
851 cacaacgaga gcactctcaa ttatacccac agttttagta acataattaa
901 gtatgtgtgt aaaacgtttt ttcctgctag tcaacggttt gtgtatcata
951 aggagttttt agtcactaga gtcaacactt ggtattgtaa gtttacaaga
1001 gtggatacct ttactctttt ccgtggtgtg tatcataata atgtggactg
1051 cgaggagttt tacaaggcta tggacgacgc gtggcactac aaaaagacgt
1101 tagcaatgct taatgcagag agaactatct tcaaggataa cgcggcgcta
1151 aatttttggt ttccgaaagt gagagacatg gtcatcgtcc ctctctttga
1201 cgcttctatt acaactggaa gaatgtctag gagagaggtt atggtgaaca
1251 aggatttcgt ttacacggtt ctcaatcata taaaaacgta ccaagccaaa
1301 gctttaactt acgcaaatgt cttgtccttt gtggagtcta ttaggtctag
1351 agttattatt aacggtgtca ctgccaggtc tgaatgggac acagacaagg
1401 caattctagg tccattagca atgacatttt tccttataac aaagttgggt
1451 catgtgcagg atgaaataat cctgaaaagg ttccagaagt tcgatagaac
1501 cgccaatgag ctaatttgga caagtctctg cgatgccctg atgggggtta
1551 ttccctcggt caaagagaca cttgtacgcg gtggttttgt gaaagtggca
1601 gaacaggcct tagagataaa gattcccgat ctatactgta ccttcacaga
1651 caggttggta ctgcagtata agaaagcgga ggagttccaa tcgtgtgatc
1701 tttccaaacc tctagaagaa tccgagaagt actataacgc actgtccgag
1751 ctatcagtgc tcgagaatct cgattccttc gatttagagg cgtttaaaac
1801 tttgtgtcag cagaagaatg tggatccgga tatggcagca aaggtggttg
1851 tggcaatcat gaagtgtgaa ttgactttgc ctttcaagaa acctacagaa
1901 gaggaaatct cagagtcgct taagacagaa gaggggtcaa gcgcggagca
1951 taaggaagtg ttgagcttac aaaatgacgc tccattcccg tgtgtgaaaa
2001 atttagtaga gggttctgta ccagcatatg gaatgtgtcc taaaggtggt
2051 ggtttcgaca agttggatgt ggacattgcc gattttcatc tcaagagtgt
2101 agatgcagta aaaaggggaa ctatgatgtc agcggtatac acagggtcta
2151 ttaaagttca gcaaatgaag aactacatag actacttaag tgcatcgctg
2201 tcagctacag tctcaaacct ctgcaaggtg cttagagatg ttcatggcgt
2251 tgacccagag tcacaagaga aatctggagt gtgggacgtt agaagaggac
2301 gctggttact taaacctaat gctaaaagtc acgcgtgggg tgtggcagaa
2351 gacgccaacc acaagttggt tattgtgttg cttaactggg acgacggaaa
2401 gcctgtttgt gatgaaacat ggttcagggt ggctgtgtca agcgattcct
2451 tgatatactc ggatatgggt aaacttaaga cgcttacgtc ttgcagtcca
2501 aatggtgagc caccggaacc caacgccaaa gtaattttgg tcgatggtgt
2551 tcccggttgt ggaaaaacga aggagattat cgaaaaggta aacttctccg
2601 aggacttagt tttagtccct ggaaaggagg cttctaagat gatcatccga
2651 agggccaacc aggctggagt gataagagcg gataaggaca atgttaggac
2701 ggtagattcc ttcttgatgc atccttctag gagggtattc aagaggttat
2751 tcatcgatga aggactgatg ctgcacacag gttgtgtgaa tttcctgctg
2801 ctgctatctc aatgcgacgt tgcgtacgtg tatggggaca cacaacaaat
2851 tccgttcatt tgtagagtag cgaatttccc gtatcctgca cattttgcaa
2901 aacttgtcgc tgatgagaag gaagttagaa gagttacgct caggtgcccg
2951 gctgatgtca catatttcct taacaagaag tatgacgggg cggtgatgtg
3001 tactagcgca gtagagagat ccgtgaaggc agaagtggtg agagggaaag
3051 gcgctctgaa cccaataacc ttaccgttgg agggtaaagt tttgaccttt
3101 acgcaagctg acaagttcga gttactcgag aaaggttaca aggatgtgaa
3151 cacggtgcac gaggtgcaag gggagacgta cgagaagact gctattgttc
3201 ggttgacatc gactccgtta gaaatcatat cgagagcatc acctcatgtt
3251 ttggtggcgc tgacaagaca cactacgcgt tgtaaatatt acaccgtagt
3301 gttagaccca atggtgaatg tgatttcaga aatggagaag ttgtctaatt
3351 tccttctcga catgtatagg gttgaagcgg ggatccaata gcaattacag
3401 atcgatgcag tattcaaggg aacggaactt gtttgttcag gacgcccaag
3451 tggagactgg cgagatatgc aattttacta tgacactctt cttcccggta
3501 acagtactat tcttaatgaa tttgatgctg ttacgatgaa tttgagggat
3551 atttccttaa acgtcaaaga ttgcagaatc gacttctcca aatctgtgca
3601 acttcccaaa gagcaaccta ttttccttaa gcctaaaata agaactgcgg
3651 cggaaatgcc aagaactgca ggtttgctgg aaaatttggt cgccatgatc
3701 aaaaggaata tgaacgcgcc agatctgaca gggacaatcg acattgagga
3751 tactgcatct cttgtagttg aaaagttttg ggattcgtac attggtaaag
3801 agtacagcgg aacgaacgaa atgaccatga caagggaaag tttttctagg
3851 tggctctcca agcaagagtc atctacagtt ggtcagctag cggattttaa
3901 ctttgtagat ttgccggcag tggatgagta caagcatatg atcaaaagtc
3951 agccaaagca aaagttagac ttgagtattc aagatgaata tcctgcgttg
4001 cagacgatag tctaccattc aaaaaagatc aatgctattt tcggtcctat
4051 gttttcggaa cttacgagga tgttactcga gaggattgac tcttcgaagt
4101 ttctgttcta cactagaaag acacctgcgc agatagagga cttcttttct
4151 gacctagact caacccaggc aatggaaatt ctggaactcg acatttcgaa
4201 gtatgataag tcacagaacg agttccattg tgcggtagag tacaagattt
4251 gggaaaagct gggaattgac gagtggctag cggaggtatg gaaacaagga
4301 cacaggaaaa cgaccttgaa ggactatacg gccggaatca aaacgtgtct
4351 atggtatcaa aggaaaagtg gtgatgtgac aacctttatt ggtaacacta
4401 tcatcattgc agcctgtttg agctcaatga tccctatgaa caaagtgata
4451 aaggcggcct tttgtgggga cgatagcctt atttatattc ctaagggttt
4501 ggacttacct gatatccagg cgggcgcgaa cctcatgtgg aactttgagg
4551 ccaaactctt cagaaagaag tatggttact tctgcggtcg ttatgttatt
4601 caccatgata gaggagccat agtatattac gatccgctta aactaatatc
4651 taagttaggt tgtaaacata ttagagatgt tgttcattta gaagagttac
4701 gcgagtcctt gtgtgatgta gctagtaatt taaataattg tgcgtatttt
4751 tcacagttag atgaggccgt tgccgaggtt cataagaccg cggtaggcgg
4801 ttcgtttgct ttttgtagta taattaagta tttgtcagat aagagattgt
4851 tgagagattt gttctttgtt tgataatgtc gatagtttcg tacgaaccta
4901 aggtaagtga tttcctcaat ctttcgaaga aggaagagat cttaccgaaa
4951 gctctaacga ggttaaagac tgtgtctatt agtactaaag atattatatc
5001 tgttaaggag tccgagactt tgtgtgatat agatttacta atcaatgtac
5051 cattagataa gtatagatat gtgggtatcc taggagctgt tttcaccgga
5101 gagtggttgg taccagactt tgttaaaggt ggagtaacga taagtgtgat
5151 agacaagcgt ctggtgaact ccaaggagtg tgtgattggt acgtacagag
5201 ccgcagccaa gagcaaaagg ttccagttca aattagttcc aaattacttc
5251 gtgtccacgg cggacgctaa gaggaagcca tggcaggttc acgttcgtat
5301 tcaagatttg aagatcgagg cgggttggca gccattagct ctggaagtag
5351 tttcagttgc tatggttacc aataatgttg ttatgaaggg tttgagggag
5401 aaggtcgtcg caataaatga tccggacgtc gaaggtttcg aaggtgtggt
5451 tgacgaattc gtcgattcgg ttgcagcatt taaagcggtt gacaacttca
5501 ggaaaaggaa aaagaaggtt gaagaaaagg gtgtagtaag taagtataag
5551 tatagaccgg agaagtacgc cggtcctaat tcgtttaatt ttaaagaaga
5601 aaatgtctta caacattacg aacccgaatc agtaccagta tttcgcagcg
5651 gtgtgggcag agcccatacc aatgcttaac cagtgcatat cggcattgtc
5701 gcaatcgtac caaacacaag cagcgagaga cactgttaga cagcaattct
5751 caaacttgtt aagtgcggtt gtgacaccga gccagcggtt cccagaaaca
5801 gggtcccggg tgtatgttaa ctcggctgtt ataaagccgt tatacgaggc
5851 tcttatgaag tcttttgata ctagaaatag gatcatagag acggaagagg
5901 agtcacgccc gtcagcatcc gaagtagcta acgcaacaca gcgtgttgat
5951 gacgcgaccg ttgccattag gagtcaaatt cagcttctgc tgagtgagct
6001 ttctagtgga catggttata tgaatagggc agagttcgag gctttattgc
6051 catggactac tgcacctgct acttaggcgt agtgcgcacg atagcgcata
6101 gtgtttttct ctccacttaa atcgaagaga taaacttacg gtgtaaatcc
6151 gtaagggtgg cgtaaaccaa attacgcaat gttttgggtt ccatttaaat
6201 cgaaacccct tatttcctgg atcacctgtt aacgcacgtt cgacgtgtat
6251 tacagtggga ataagtaaaa gtgagaggtt cgaatcctcc ctaaccccgg
6301 gtaggggccc a