Sequence of DPV Pepper mottle virus

Pepper mottle virus isolate 137 clone M50 polyprotein gene, partial cds.

ACC No: JN222367

Dated: 2011-09-06 | Length: 1944 | CRC: 2073879044

                
ID   JN222367; SV 1; linear; genomic RNA; STD; VRL; 1944 BP.
XX
AC   JN222367;
XX
DT   06-SEP-2011 (Rel. 110, Created)
DT   06-SEP-2011 (Rel. 110, Last updated, Version 1)
XX
DE   Pepper mottle virus isolate 137 clone M50 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Pepper mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1944
RA   Quinones M., Arana F., Zerbini F.;
RT   "Partial nucleotide sequence of Pepper mottle virus isolated from pepper in
RT   Cuba";
RL   Unpublished.
XX
RN   [2]
RP   1-1944
RA   Quinones M., Arana F., Zerbini F.;
RT   ;
RL   Submitted (06-JUL-2011) to the INSDC.
RL   Plant Pathology, CENSA, Carretera de Tapaste y Autopista Nacional, San Jose
RL   de Las Lajas, Mayabeque 32700, Cuba
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1944
FT                   /organism="Pepper mottle virus"
FT                   /host="sweet pepper cv. Espanol"
FT                   /isolate="137"
FT                   /mol_type="genomic RNA"
FT                   /country="Cuba"
FT                   /collected_by="Madelaine L. Quinones"
FT                   /collection_date="Feb-2007"
FT                   /identified_by="Madelaine L. Quinones"
FT                   /clone="M50"
FT                   /db_xref="taxon:12209"
FT   CDS             <1. .1773
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="AEN79503.1"
FT                   /translation="CVDDFNNQFYSKNIECCWTVGMTKFYGGWSKLLTALPAGWIYCDA
FT                   DGSQFDSSLTPYLINAVLTIRYAFMEDWDIGYKMLQNLYTEIIYTPISTPDGTIVKKFR
FT                   GNNSGQPSTVVDNSLMVVLAMHYAFVREGIAFEEIDSICKFFVNGDDLLIAVNPERESL
FT                   LDTLSSHFSDLGLNYDFSSRTRDKSELWFMSHCGISVEGMYIPKLEEERIVSILPWDRA
FT                   ELPEYRLEAICAAMIESWGYPQLTHEIRRFYSWLMEKNPYADLASEGKAPYISELALKK
FT                   LYLNQDVQNDELQAYLKYFADADEEFECGTYEVHHQSSSRSDTLNAGEEKKENKEVATV
FT                   SDGMKKKEVKSTRDSDVNAGTVGTFTVPRIKSITEKMRMPKQRKEGVLNLAHLLEYKPS
FT                   QVDISNTRSTQAQFDNLFCEVLKAYYFQEEAMGTGMKGLMVWCIENATFPNISGTWTMR
FT                   DGDDQVEFPLKPVIENAKPTFRQIMAHFSDVAEAYIEMRNKQEPYMPRYGLVRNLRDMG
FT                   LARYAFDFYEVTSRTSTRAREAHIQMKAAALKSAQTRLFGLDGGIGTQGENTERHTTED
FT                   VSPDMHTLLGVRNM"
FT   mat_peptide     <1. .951
FT                   /product="nuclear inclusion B"
FT                   /note="NIb"
FT   mat_peptide     952. .1770
FT                   /product="coat protein"
FT                   /note="CP"
FT   3'UTR           1774. .>1944
FT                   /note="3'UTR"
XX
SQ   Sequence 1944 BP; 596 A; 347 C; 467 G; 534 T; 0 other;

jn222367 Length: 1944  06-SEP-2011  Type: N  Check: 5629  ..

       1  tgtgtggacg atttcaacaa ccagttttat tcgaagaata ttgaatgttg
      51  ttggacggtt gggatgacca aattttatgg tggatggagt aagcttctaa
     101  cagctttgcc tgctggatgg atatattgtg atgcagatgg ctcgcaattt
     151  gatagttcat tgacacctta tctcataaat gccgtattga ctatacggta
     201  tgccttcatg gaagattggg acattgggta taagatgttg caaaacttgt
     251  acacagaaat aatctacaca ccaatatcca cgcctgatgg aacaattgtg
     301  aagaagttca gaggcaacaa cagtgggcaa ccttccaccg tagtagacaa
     351  ttcacttatg gttgtgcttg ctatgcatta tgcatttgta cgggaaggta
     401  tagcatttga agaaattgac tccatatgca agttcttcgt taatggagac
     451  gatttgctaa tagctgtgaa cccagaacgt gagagcctat tggacacact
     501  gtcaagtcat ttctctgatc tagggctcaa ttatgatttc tcatctcgca
     551  caagggataa atcagaattg tggtttatgt cacattgtgg gatttctgtt
     601  gaaggtatgt atataccgaa actcgaagag gagcgaattg tgtcaattct
     651  cccatgggac cgagcagagc taccagagta cagattggag gctatctgtg
     701  cagcaatgat cgaatcatgg ggctacccac aattgactca tgagattcga
     751  agattttata gctggttaat ggagaagaac ccctacgctg acttggcatc
     801  tgaaggaaaa gctccatata tttctgaact agctctaaag aagctgtatc
     851  tgaatcaaga tgtacaaaat gatgagcttc aggcttacct caagtatttc
     901  gctgatgcag atgaagagtt tgagtgcggt acatatgaag ttcatcatca
     951  gagcagctca agatcagaca cattgaatgc tggagaggag aaaaaggaaa
    1001  ataaagaagt ggccactgtg tccgatggaa tgaaaaagaa ggaggttaaa
    1051  tcaacacgcg attctgatgt gaatgcggga actgttggaa cattcaccgt
    1101  accaagaatc aaatcaatca ctgagaaaat gcgtatgccc aaacaaagga
    1151  aagagggtgt tcttaacttg gctcatttac ttgaatacaa accaagccaa
    1201  gttgacatat cgaacactcg ctcaacccag gcacaatttg acaatttgtt
    1251  ttgtgaagtt ttgaaggcat actattttca ggaggaggca atgggtacag
    1301  ggatgaaggg cttgatggtt tggtgcattg agaatgccac gtttcccaac
    1351  attagtggaa catggaccat gagggatgga gatgatcaag tggaattccc
    1401  attaaaacct gtgatagaga atgccaagcc gacttttcgg cagataatgg
    1451  cgcatttttc tgatgtggct gaggcatata tagaaatgcg caacaagcaa
    1501  gaaccatata tgccacgata tggtttggtc cgaaatttac gagacatggg
    1551  tttggctcga tacgcatttg acttttacga agtcacatcg cgtacgtcaa
    1601  cacgtgctcg cgaagcccat atacaaatga aagcagcagc attaaaatct
    1651  gctcagacaa gattgtttgg gttggatggt ggcataggaa cacaaggaga
    1701  aaacacagag cgccacacca ctgaagatgt gagccccgac atgcatacct
    1751  tgcttggggt caggaatatg tgactggtgt ggtctctggg atgaaatatt
    1801  attatatgta gtatgcaata tatagtatgg cttttctcgt tccagtcttt
    1851  atattaatga gagtaactta agtaagtaat ttgtacttca aggattaatc
    1901  aaggtgactt tctgacactc tcagtgaggt gacttgttta gtct