Sequence of DPV Large cardamom chirke virus

Large cardamom chirke virus isolate ChK-1 polyprotein gene, partial cds.

ACC No: JN257715

Dated: 2013-05-14 | Length: 1776 | CRC: 346786483

                
ID   JN257715; SV 1; linear; genomic RNA; STD; VRL; 1776 BP.
XX
AC   JN257715;
XX
DT   02-NOV-2011 (Rel. 110, Created)
DT   14-MAY-2013 (Rel. 116, Last updated, Version 2)
XX
DE   Large cardamom chirke virus isolate ChK-1 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Large cardamom chirke virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Macluravirus.
XX
RN   [1]
RP   1-1776
RA   Mandal B., Vijayanandraj S., Shilpi S., Pun K.B., Singh V., Pant R.P.,
RA   Jain R.K., Varadarasan S., Varma A.;
RT   "Disease distribution and characterisation of a new macluravirus associated
RT   with chirke disease of large cardamom";
RL   Ann. Appl. Biol. 160(3):225-236(2012).
XX
RN   [2]
RP   1-1776
RA   Vijayanandraj S., Shilpi S., Mandal B., Jain R.K.;
RT   ;
RL   Submitted (15-JUL-2011) to the INSDC.
RL   Plant Pathology, Indian Agricultural Research Institute, Pusa Campus, New
RL   Delhi, Delhi 110012, India
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1776
FT                   /organism="Large cardamom chirke virus"
FT                   /host="Amomum subulatum (large cardamom)"
FT                   /isolate="ChK-1"
FT                   /mol_type="genomic RNA"
FT                   /country="India:Kalimpong, West Bengal"
FT                   /isolation_source="infected leaves"
FT                   /collection_date="02-Apr-2011"
FT                   /proviral
FT                   /db_xref="taxon:1105028"
FT   CDS             <1. .1575
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="contains NIb and coat protein"
FT                   /db_xref="GOA:G8H3M4"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:G8H3M4"
FT                   /protein_id="AER38178.1"
FT                   /translation="GNNSGQPSTVVDNTLILMMSFFYAYISKTNDYLCEFIDDRMRFVC
FT                   NGDDNKFSLSPDFINEFGGDFSKEIEQLGLHYEFDELTDDITENPYMSLTMVRTPSGIG
FT                   FSLHPSRIVAIVQWIKKGDIIQATQAAFAAMVEAYNDPWLFSVLHLYLVWLLLEYKDAL
FT                   GFAKSNNIFGLVYMDPCQVHALHYGIGDERQPDDEENDASEDEEDDLTIYGTQQFQMDF
FT                   SGTSQQQGTSSTTGATISGAASGGTTPANTTQTAPLAPVTSGRGTGQITPPQVTPEQPA
FT                   ANDEDVDNGEDVQWRIPQIPRKMSHFNNPKAKGKRIWNSRVVKHIDADQYTQSSQLATT
FT                   AQFERWVEDVKKNLGSPNENDWQIYLTTWCLWCANNGTSSEVATNQNMEIHSGGQYATI
FT                   PISLFVEPAIRHGGFRKVMRHLSGVTSQILEQGEKMTAWGTKRGYTQLAMIPYAFDFCV
FT                   QTTGMPKTIREQLNQGKAAAIGSGYQRVMLLDGKIQGSKTSYERHVDTDVDEFEHGEKP
FT                   QARATLY"
XX
SQ   Sequence 1776 BP; 546 A; 357 C; 424 G; 449 T; 0 other;

jn257715 Length: 1776  14-MAY-2013  Type: N  Check: 4059  ..

       1  gggaataata gtggtcagcc aagcacagtg gttgataaca cactcatttt
      51  gatgatgtcc tttttctacg cctacatctc taagacaaac gattatcttt
     101  gtgagtttat tgatgacagg atgaggttcg tttgtaacgg tgatgataat
     151  aaattctcac tgtcaccaga ttttatcaat gaattcggtg gagatttctc
     201  aaaggagatt gagcagttgg ggctacatta cgaatttgat gaattgactg
     251  atgatatcac agagaaccct tacatgagct taactatggt cagaactcca
     301  tctgggattg gtttctcatt gcatccatca cgtattgttg caatcgtgca
     351  atggattaag aaaggggata taattcaagc aacacaggca gctttcgcag
     401  caatggttga agcgtataac gatccatggc tattcagtgt actgcactta
     451  taccttgtct ggttattgct tgagtataag gatgcacttg gatttgcaaa
     501  aagtaacaac atttttggtt tggtttacat ggacccctgc caagttcacg
     551  ctctccatta cggcattggc gatgaaaggc aacctgatga tgaagaaaat
     601  gatgctagtg aggatgagga ggatgactta acgatatatg gaacgcagca
     651  attccaaatg gacttttctg gcacgtcgca gcaacaaggc acatcaagca
     701  caactggtgc gacaatatct ggtgcagcta gtggtggaac cactcccgcg
     751  aacacaacac aaacagctcc attagcacca gttacgagtg ggcgaggaac
     801  aggccagatt acaccaccac aagtaacgcc ggaacaacca gcagcaaatg
     851  atgaggatgt tgataatggg gaagatgtac agtggagaat acctcaaata
     901  cctaggaaga tgagccattt caataaccca aaagctaaag ggaaacgaat
     951  ctggaacagt cgggttgtaa aacacatcga tgctgatcaa tatacgcaat
    1001  cctcacagtt ggcaacaaca gcacaatttg agagatgggt ggaggacgtc
    1051  aagaagaatt taggttcacc aaatgagaac gactggcaga tctatttaac
    1101  gacgtggtgc ttatggtgtg caaacaatgg aacatcatca gaagttgcga
    1151  ccaaccaaaa catggaaata cattctggtg gccaatatgc aacgattcca
    1201  atctccttgt ttgtggaacc agcaattcga catgggggct ttcgaaaggt
    1251  aatgcgacat cttagtgggg taacatcaca aatacttgag cagggagaga
    1301  agatgaccgc atggggcaca aaaagagggt atactcagct cgcgatgata
    1351  ccctacgctt tcgacttctg cgtacaaaca actggtatgc ctaaaacaat
    1401  tcgagagcag ctgaaccaag ggaaagctgc tgccataggc tctggatacc
    1451  agcgcgtgat gcttttggat ggaaagattc aaggtagcaa aacgagttat
    1501  gagagacacg tcgatactga tgtcgacgaa tttgagcatg gggagaaacc
    1551  gcaagctcgc gcaacactat actaagcaca gtggtgctag tatcgtgtga
    1601  aaaataaaca aatagtttct tatttgaaat ttccttttcc gttctagcgg
    1651  tgtttatagg ttcaatggga gtttttgtgg gttttctctc agcgcctagt
    1701  aaccctcaac accatatcta agcttgctct ggatgtgcag ctggcactct
    1751  atgtgcttat cctacctccg tagaag