Sequence of DPV Bean necrotic mosaic virus
Bean necrotic mosaic virus isolate TF-SP segment S non-structural silencing protein (NSs) and nucleocapsid protein (N) genes, complete cds.
ACC No: JN587268
Dated: 2012-06-13 | Length: 2584 | CRC: -784967946
ID JN587268; SV 1; linear; genomic RNA; STD; VRL; 2584 BP.
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AC JN587268;
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DT 13-JUN-2012 (Rel. 113, Created)
DT 13-JUN-2012 (Rel. 113, Last updated, Version 1)
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DE Bean necrotic mosaic virus isolate TF-SP segment S non-structural silencing
DE protein (NSs) and nucleocapsid protein (N) genes, complete cds.
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KW .
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OS Bean necrotic mosaic virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN [1]
RC Publication Status: Online-Only
RP 1-2584
RA Oliveira A.S., Melo F.L., Inoue-Nagata A.K., Nagata T., Kitajima E.W.,
RA Resende R.O.;
RT "Characterization of Bean Necrotic Mosaic Virus: A Member of a Novel
RT Evolutionary Lineage within the Genus Tospovirus";
RL PLoS One 7(6):e38634-e38634(2012).
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RN [2]
RP 1-2584
RA Oliveira A.S., Inoue-Nagata A.K., Nagata T., Kitajima E.W., Resende R.O.;
RT ;
RL Submitted (16-AUG-2011) to the INSDC.
RL Cell Biology, University of Brasilia, Instituto de Ciencias Biologicas,
RL Campus Darcy Ribeiro, Asa Norte, Brasilia, DF 70910-900, Brazil
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FH Key Location/Qualifiers
FH
FT source 1. .2584
FT /organism="Bean necrotic mosaic virus"
FT /segment="S"
FT /host="Phaseolus vulgaris"
FT /lab_host="Physalis pubescens"
FT /isolate="TF-SP"
FT /mol_type="genomic RNA"
FT /country="Brazil"
FT /collection_date="15-Jul-2006"
FT /note="acronym: BeNMV"
FT /db_xref="taxon:1033976"
FT gene 61. .1380
FT /gene="NSs"
FT CDS 61. .1380
FT /codon_start=1
FT /gene="NSs"
FT /product="non-structural silencing protein"
FT /protein_id="AER23987.1"
FT /translation="MQTLVNLGKEFGSQVNQKHVIDTYWVKTKFSGSNNFGSNYVQMYS
FT DEDIQTGFRFNEPGMEIISDVPDVLQKDSSVEVFSDLGVSFVFDAEKVTIKISHGSVNK
FT LGVKHKGHLKVLEFEDPNVIEGTVDRNLVASVPGINNDDIEIKNETINALPSMNMIHLK
FT EDSYKITKSPNCFFGKRNMLRRGWIGTGYVTNIHPIGYVLPKATNRCLGTLSLKSMEST
FT VEKGVLSSDIAHAELSLGGKCNFHLFSSCKGDLGDVSFMRNVKFFEDKHERVFTIYVKT
FT SSDIDNNKSSILVIFKTVCYSESKEGTVSVSSDDKLQGSINLSELPESGFFDHKAKSML
FT IVQSLIKIHNEFASKISEKLNKSVIVYTLRSVDSFKKEITEIDSRAMNYLISPEGEVFF
FT LSRTFQESLPTNMSSLTYFFDLQTFGWSANYLSGDLVVRK"
FT gene complement(1696. .2508)
FT /gene="N"
FT CDS complement(1696. .2508)
FT /codon_start=1
FT /gene="N"
FT /product="nucleocapsid protein"
FT /protein_id="AER23986.1"
FT /translation="MGSNALKLNAENLKKLLLFNDEVEFEQQSTGFKFVDFCKAHEKDK
FT FNPTSALTFLKNRKAIYSLCKASTFNYGVYEIKKGDKATDTDFTFKRLDAFLRVKLLTH
FT CTKIWDGTDPNAQTALCSELAKIPIVKAYGLEVSDKQKCYIAIVLGGNLSLLASLPGCE
FT VACFALAIFQDLKKNELGIKSDFDTKDQAGRVAAVLDAKNFVFGEPENEKLKKIAGILK
FT EMTPTRRGHAALTKYAEQLSIISGVIGVTFEMPGTSKAKESKNHGFMS"
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SQ Sequence 2584 BP; 801 A; 463 C; 474 G; 846 T; 0 other;
jn587268 Length: 2584 13-JUN-2012 Type: N Check: 7593 ..
1 agagcaatcg gtgcgattaa agaattcaaa gcttaaacaa agtgagacat
51 tatccacacc atgcagactc tcgttaacct aggaaaagag tttggttcgc
101 aagtgaacca gaagcatgtt atagatacct actgggtcaa aactaaattt
151 agtggttcca acaatttcgg atcaaattat gttcagatgt attcagatga
201 agacattcaa acagggttta ggttcaatga acctggaatg gagatcattt
251 ctgatgttcc agacgtactc caaaaggatt ccagtgttga ggtcttttca
301 gatttaggag tttcttttgt gtttgacgca gaaaaagtta ccatcaaaat
351 atctcatggc tctgtcaaca agctgggtgt caagcataaa ggtcatctta
401 aagttttaga gtttgaagat ccaaatgtta ttgaaggcac tgttgacagg
451 aatttggttg catcggtacc aggcataaac aatgatgaca ttgagattaa
501 aaatgaaaca atcaatgcac tgccttccat gaacatgatt catcttaagg
551 aagactctta taaaatcaca aaatcaccta attgcttttt tggcaagcgg
601 aacatgctcc gaagaggttg gattggaaca ggatatgtta ctaacatcca
651 tccgattggt tatgtgttgc ctaaagcaac taacagatgt ttagggacat
701 tatccttaaa atctatggaa agcacggttg aaaaaggtgt tttgagctct
751 gatatagccc atgctgagct gagccttgga gggaaatgca atttccacct
801 attcagcagt tgcaaagggg atttaggtga tgtttcattc atgagaaatg
851 tcaagttctt tgaagacaaa catgaaaggg ttttcacaat ctatgtcaag
901 acttctagtg acatagacaa caataaaagc agcattttgg ttatatttaa
951 aaccgtttgc tactcagaga gcaaagaagg cacagtttct gtgtcttctg
1001 atgacaagct gcaaggtagc atcaacctgt cagagctacc tgagtctggg
1051 ttctttgatc acaaagccaa gtctatgtta attgtacaat ctttaatcaa
1101 aatccacaac gagtttgcta gcaaaatttc tgaaaagctg aacaagagcg
1151 ttattgttta cactttgaga tctgttgact ccttcaaaaa ggagatcaca
1201 gagattgatt ctagggcaat gaattattta ataagtcctg aaggagaagt
1251 gtttttcctc tcaagaacat tccaggaatc tttgccgaca aacatgagtt
1301 ctttgactta cttttttgat ttgcaaacct tcgggtggtc agctaattac
1351 ctttcaggtg atttggtggt cagaaagtaa tcttatcaac atatataaag
1401 cttaatttac tcaaatttta tttagagctt tcaatgttag ttttagtaga
1451 taaataagta aaaacaaaaa acaacaaaaa aagcataaaa acaaaaaacc
1501 aaaaagagag ggttttccct ccaaattggc ttgaccaact tgtgggagaa
1551 taatctcctc tttttgggtt ttttgatttt ttaattttta tttggttttt
1601 tattttattt atttttattt tatttattta tatactagtt tattatataa
1651 ttatatataa ttatatatat taacatcatc aacattcatg aatgtttagc
1701 tcatgaagcc atgatttttg ctttccttag ccttgcttgt tccaggcatt
1751 tcaaatgtca cacctatgac acctgaaata atgctcagtt gctcagcata
1801 tttggttaaa gcagcatgcc ctcttcttgt tggtgtcatc tcctttaaga
1851 ttcctgcaat ctttttcaat ttctcgttct ctggttctcc aaaaacgaaa
1901 ttctttgcat ccaacacggc agcaactcta ccagcttggt ctttagtatc
1951 aaaatcactt ttaatgccga gctcattctt cttaagatct tggaaaatgg
2001 ctaaagcaaa gcaagcgact tcacagccag gtaaggaagc aaggagagag
2051 aggttgcctc ctagaactat agctatatag catttttgct tgtcagacac
2101 ttctaagcca taggctttga ctattggtat ttttgccagc tcactacaga
2151 gtgcagtttg agcattggga tcagttccat cccaaatttt ggtgcagtgt
2201 gtcagaagtt tcactctcaa aaaagcatca agccttttga aagtgaaatc
2251 cgtatcagtg gctttatcac cttttttgat ttcatataca ccgtaattaa
2301 atgtgcttgc tttgcacagg gaataaattg ctttcctgtt cttaaggaaa
2351 gtcaatgcag atgtagggtt gaatttgtct ttctcatgag ccttgcaaaa
2401 atcaacaaat ttaaaaccag ttgactgttg ctcaaactca acttcatcgt
2451 tgaacaaaag tagtttcttc agattctcag cattcaactt tagtgcatta
2501 gatcccatct tgttgtctta gaaggtcact atgtatataa atttcaattc
2551 agattttctt ttcttttctc gcaccgattg ctct