Sequence of DPV Plum pox virus
Plum pox virus isolate UKR 44188 polyprotein gene, partial cds.
ACC No: JN637991
Dated: 2012-12-12 | Length: 1334 | CRC: -1914951890
ID JN637991; SV 2; linear; genomic RNA; STD; VRL; 1334 BP.
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AC JN637991;
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DT 31-JAN-2012 (Rel. 111, Created)
DT 12-DEC-2012 (Rel. 115, Last updated, Version 2)
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DE Plum pox virus isolate UKR 44188 polyprotein gene, partial cds.
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KW .
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OS Plum pox virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-1334
RA Mavrodieva V.A., James D., Williams K., Negi S., Varga A., Mock R.,
RA Levy L.;
RT "Molecular analysis of a Plum pox virus W isolate in plum germplasm hand
RT carried into the USA from the Ukraine shows a close relationship to a
RT Latvian isolate";
RL Plant Dis. 97:44-52(2012).
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RN [2]
RP 1-1334
RA Williams K.L., Mavrodieva V.A.;
RT ;
RL Submitted (01-SEP-2011) to the INSDC.
RL Center of Plant Health Science and Technology Beltsville Laboratory, USDA
RL APHIS PPQ, Bldg 580, BARC-East, Beltsville, MD 20705, USA
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RN [3]
RC Sequence update by submitter
RP 1-1334
RA Mavrodieva V.A., Mock R., Levy L.;
RT ;
RL Submitted (10-FEB-2012) to the INSDC.
RL Center of Plant Health Science and Technology Beltsville Laboratory, USDA
RL APHIS PPQ, Bldg 580, BARC-East, Beltsville, MD 20705, USA
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CC On Dec 11, 2012 this sequence version replaced gi:374087684.
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FH Key Location/Qualifiers
FH
FT source 1. .1334
FT /organism="Plum pox virus"
FT /host="Prunus cerasifera"
FT /strain="PPV-D"
FT /isolate="UKR 44188"
FT /mol_type="genomic RNA"
FT /country="Ukraine"
FT /db_xref="taxon:12211"
FT CDS <1. .1117
FT /codon_start=2
FT /product="polyprotein"
FT /note="contains NIb protein and capsid protein"
FT /protein_id="AEY82644.2"
FT /translation="ETALKKLYTDTEASETEIERYLEAFYNDINDEGESNVVVHQADER
FT EDEEEVDAGKPIVVTTPAATSSILQPPPVIQPAPRTTAPMFNPIFTPATTQPATKPVSQ
FT VSGPQLQTFGTHGNEDASPSNSNALVNTNRDRDVDAGSIGTFTVPRLKAMTSKLSLPKV
FT KGKSIMNLNHLAHYSPAQVDLSNTRAPQSCFQTWYEGVKRDYDVTDDEMSIILNGLMVW
FT CIENGTSPNINGMWVMMDGETQVEYPIKPLLDHAKPTFRQIMAHFSNVAEAYIEKRNYE
FT KAYMPRYGIQRNLTDYSLARYAFDFYEMTSTTPVRAREAHIQMKAAALRNVQNRLFGLD
FT GNVGTQEEDTERHTAGDVNRNMHNLLGVRGV"
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SQ Sequence 1334 BP; 402 A; 293 C; 308 G; 329 T; 2 other;
jn637991 Length: 1334 12-DEC-2012 Type: N Check: 329 ..
1 ggagacagca ctgaaaaagc tttacactga cactgaagcg tctgagacag
51 aaattgagcg atatcttgaa gctttttaca acgacattaa cgatgaaggt
101 gagtccaacg ttgttgtgca ccaagctgac gaaagagaag acgaggagga
151 agttgatgca ggcaagccga ttgtagttac tacaccggca gcaactagct
201 caatacttca accacctcca gtcatacagc ccgcaccccg gactacggcg
251 ccaatgttca accccatttt cacgccagct acaactcaac cagcaacaaa
301 accagtttca caggtgtcag gacctcaact gcaaactttt ggaacacatg
351 gtaatgagga tgcctcacct agcaactcga acgcactagt caacacaaac
401 agagacaggg acgtcgatgc aggatcaatt ggaactttca cagtgccacg
451 tttgaaggca atgacttcga aactctctct gccaaaggtg aagggaaagt
501 ccattatgaa cttgaaccat ttggcacatt atagtcctgc acaagttgac
551 ttgtcaaaca cgagggctcc gcagtcttgt ttccaaactt ggtatgaagg
601 agttaagcga gattatgatg tcacggacga tgaaatgagc atcattttaa
651 atggtcttat ggtttggtgc atagagaatg gaacatcccc gaatatcaat
701 ggaatgtggg tgatgatgga tggggaaaca caagtggagt atccaataaa
751 gccattgttg gatcatgcga aacccacttt tagacaaatt atggcacatt
801 tcagtaacgt ggctgaagcg tatattgaaa aacgaaatta tgaaaaagca
851 tacatgccaa ggtatggaat tcagcgcaac ctgacagact acagcctcgc
901 cagatatgcc tttgattttt acgaaatgac ttcaacgaca cccgtacggg
951 cacgtgaagc tcatatccag atgaaggcag cagcattgag aaatgttcaa
1001 aatcgtttat ttggcttgga tggaaacgtc ggaacacaag aagaggacac
1051 agagagacac accgctggtg atgttaatcg caacatgcac aacctcctcg
1101 gtgtgagggg agtgtagtgg tctcggtatc tatcataaac tctacctggg
1151 tgagagtcta gtcatccagt tgtttttaga ttcctgttag catccttttc
1201 tccgctttaa tagcagtaca ttcagtgagg ttttacctcc atatgttcta
1251 gtctgttatt gtcgaacaca ggcccttgta tctgatgtag cgagtgcttc
1301 actccattcg ggttatagtt cttgtgcarg agmc