Sequence of DPV Plum pox virus

Plum pox virus strain DF1 polyprotein gene, partial cds.

ACC No: JN655521

Dated: 2011-11-06 | Length: 836 | CRC: 2031045523

                
ID   JN655521; SV 1; linear; genomic RNA; STD; VRL; 836 BP.
XX
AC   JN655521;
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DT   06-NOV-2011 (Rel. 110, Created)
DT   06-NOV-2011 (Rel. 110, Last updated, Version 1)
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DE   Plum pox virus strain DF1 polyprotein gene, partial cds.
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KW   .
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OS   Plum pox virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-836
RA   Fattouh F.A., Awad E.;
RT   "Evaluation of some molecular techniques";
RL   Unpublished.
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RN   [2]
RP   1-836
RA   Fattouh F.A., Awad E.;
RT   ;
RL   Submitted (10-AUG-2011) to the INSDC.
RL   Botany and Microbiology, Faculty of Science, Muhram Bek, Alexandria 21522,
RL   Egypt
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FH   Key             Location/Qualifiers
FH
FT   source          1. .836
FT                   /organism="Plum pox virus"
FT                   /host="peach; cultivar: Nemaguard"
FT                   /strain="DF1"
FT                   /mol_type="genomic RNA"
FT                   /country="Egypt:Alexandria"
FT                   /collection_date="2010"
FT                   /db_xref="taxon:12211"
FT   CDS             <1. .>836
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /note="contains P3, 6K1 and CI proteins"
FT                   /protein_id="AER41968.1"
FT                   /translation="YLQELEQAWKELSWSEKFSAILESQRWRKHIPKPFIPKDGADLGG
FT                   RYDISVRSLLGNQYKRLRDVVRRKRDDVVRYTHQSMGKLFCKAIGISTSFLPSTLKMLD
FT                   MLIVFGLLLSIGATCNSMINEHKHLKQLAADREDKKRFKRLQVLYTRLSEKVGCTPTAD
FT                   EFLEYVGGENPDLLKHAEDLIGDGQVVVHQSKRDSQANLERVVAFVALVMMLFDSERSD
FT                   GVYKILNKLIGIMGSVDQTVHHQSLDDIEDILDEKKLTVDFVLQSNEVAPTVPFDS"
XX
SQ   Sequence 836 BP; 255 A; 168 C; 205 G; 208 T; 0 other;

jn655521 Length: 836  06-NOV-2011  Type: N  Check: 560  ..

       1  ttatctccag gagttggagc aagcttggaa agagttaagc tggtcggaaa
      51  aattctctgc aatcttggaa tcgcagcggt ggcgaaaaca tataccaaaa
     101  cctttcatcc caaaagacgg cgcagattta ggaggcaggt acgacatctc
     151  cgttcggtca ttacttggca accagtacaa acgcctgaga gacgtagtcc
     201  gacggaaaag agacgatgtg gttcgttata cacaccagtc gatggggaag
     251  ctattttgca aagccatcgg aatttccaca agttttcttc caagcactct
     301  taaaatgctt gatatgctca tcgtgttcgg tctcttgctt tcaataggag
     351  ccacatgcaa ctcaatgatc aatgagcata aacatcttaa gcaacttgcc
     401  gccgatcggg aagataagaa aaggttcaaa agattgcaag tcttatacac
     451  gaggttatca gagaaggttg gttgcacacc aacagcagat gaattcctgg
     501  agtatgtggg aggtgaaaac cctgatttac tgaaacatgc agaggatcta
     551  attggggatg gtcaagttgt tgttcatcaa agcaagagag actcacaagc
     601  aaatttggaa cgggttgtag catttgtagc tcttgttatg atgctgtttg
     651  actcggagcg aagtgacggc gtgtacaaga ttctcaataa actcataggc
     701  atcatgggga gtgtcgacca gactgttcat caccagagct tggacgatat
     751  agaagatata ctggatgaga agaagctcac agtcgatttc gtgctgcaaa
     801  gtaacgaagt tgcaccaact gtcccatttg actcaa