Sequence of DPV Narcissus latent virus
Narcissus latent virus isolate NL1_15 polyprotein gene, partial cds.
ACC No: JN662386
Dated: 2012-07-20 | Length: 1033 | CRC: 1413701843
ID JN662386; SV 2; linear; genomic RNA; STD; VRL; 1033 BP.
XX
AC JN662386;
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DT 13-FEB-2012 (Rel. 111, Created)
DT 20-JUL-2012 (Rel. 113, Last updated, Version 2)
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DE Narcissus latent virus isolate NL1_15 polyprotein gene, partial cds.
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KW .
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OS Narcissus latent virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Macluravirus.
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RN [1]
RP 1-1033
RA Sochacki D., Berniak H., Komorowska B.;
RT "Molecular characterization of Polish isolates of Narcissus latent virus";
RL Unpublished.
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RN [2]
RP 1-1033
RA Sochacki D., Berniak H., Komorowska B.;
RT ;
RL Submitted (09-SEP-2011) to the INSDC.
RL Plant Protection, Research Institute of Horticulture, Konstytucji 3Maja
RL 1/3, Skierniewice, Lodzkie 96-100, Poland
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RN [3]
RC Sequence update by submitter
RP 1-1033
RA Sochacki D., Berniak H., Komorowska B.;
RT ;
RL Submitted (18-JUL-2012) to the INSDC.
RL Plant Protection, Research Institute of Horticulture, Konstytucji 3Maja
RL 1/3, Skierniewice, Lodzkie 96-100, Poland
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CC On Jul 18, 2012 this sequence version replaced gi:374921812.
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FH Key Location/Qualifiers
FH
FT source 1. .1033
FT /organism="Narcissus latent virus"
FT /host="Narcissus sp.; cultivar: Hawera"
FT /isolate="NL1_15"
FT /mol_type="genomic RNA"
FT /country="Poland"
FT /collection_date="27-Sep-2010"
FT /db_xref="taxon:48200"
FT CDS <1. .1020
FT /codon_start=1
FT /product="polyprotein"
FT /note="contains NIb-CP"
FT /db_xref="UniProtKB/TrEMBL:H6UM51"
FT /protein_id="AFA26136.2"
FT /translation="DPCQVFALHYGSSEGLESVDFESDNESANDADDDVTPSLELQMDV
FT ENLIPEKGKNAKNTNKDEQSKRTDATAQGESSSPLKSSTEEAANRGDTNPPQGDPLVDD
FT EIVEWVIPKMSSNIVTSPVPVVNGKKLWKRGILKNMPKIMFSTTSTMATQVQLTSWVEE
FT VKKSLALKTDDAWTVVITNWCIWCANNGTSSEIDTSQNMEIRDSFGKVQEVPIEIFVNP
FT AVENGGLRKIMRHFSGITYEILKVGKQMTAWGNKRGFTEKSMIPYAFDYYVVTNTTPKT
FT VREQLAQSKAAAIGSGTMRKMILDGNMQGSHASYERHVDTDNSEYEHGSSVDQRPYLT"
FT mat_peptide <1. .126
FT /product="NIb"
FT mat_peptide 127. .1017
FT /product="coat protein"
FT 3'UTR 1021. .>1033
XX
SQ Sequence 1033 BP; 331 A; 211 C; 257 G; 234 T; 0 other;
jn662386 Length: 1033 20-JUL-2012 Type: N Check: 3911 ..
1 gacccatgtc aggtgttcgc actacactat gggtcatctg aaggtttgga
51 gagcgtggac ttcgagagtg acaacgagag tgcaaatgat gctgatgatg
101 acgtcacgcc cagcttggaa ctccagatgg atgtcgagaa tctgattcct
151 gagaaaggga aaaacgctaa gaacacgaac aaagatgaac aaagcaagcg
201 aactgatgcg actgctcagg gcgagtcaag tagccctctc aagagcagca
251 cagaggaggc cgccaaccga ggtgacacaa atccaccaca aggagatcct
301 ttagttgatg atgagatagt cgaatgggtc attccaaaaa tgagttcaaa
351 cattgtgacc tcaccagtgc cagttgtcaa tggcaagaaa ctgtggaagc
401 gaggaatcct gaaaaacatg ccgaaaataa tgttcagcac aacttcaacc
451 atggcaactc aagttcaact aacatcatgg gttgaggaag ttaagaaatc
501 actcgccctc aaaacagatg atgcgtggac ggttgtaatc acaaattggt
551 gcatttggtg cgctaacaat ggcacctcat ctgaaattga cacatcacag
601 aatatggaaa ttcgtgatag ttttggaaaa gttcaagaag tccccattga
651 aatttttgtt aatccagctg ttgagaatgg tgggctacgg aaaatcatga
701 ggcatttttc tggcataaca tatgaaattt tgaaggttgg taagcaaatg
751 acagcctggg ggaacaagag gggttttact gagaaatcga tgatccccta
801 cgcttttgac tactatgtcg tcacaaacac aacaccgaag actgtgcgtg
851 agcaattggc tcaatcgaaa gcagcagcaa ttggctcagg cacgatgaga
901 aagatgatcc ttgatggaaa catgcaaggg tcacacgcta gttatgaacg
951 acatgtcgac acggacaata gcgaatatga gcatggttcc agtgttgacc
1001 agaggcccta tcttacttaa gttctgcgtt ctt