Sequence of DPV Chilli leaf curl virus
Chilli leaf curl Multan virus isolate Nagpur segment DNA-A, complete sequence.
ACC No: JN663865
Dated: 2013-01-02 | Length: 2749 | CRC: -477372614
ID JN663865; SV 1; circular; genomic DNA; STD; VRL; 2749 BP.
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AC JN663865;
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DT 02-JAN-2013 (Rel. 115, Created)
DT 02-JAN-2013 (Rel. 115, Last updated, Version 1)
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DE Chilli leaf curl Multan virus isolate Nagpur segment DNA-A, complete
DE sequence.
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KW .
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OS Chilli leaf curl Multan virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2749
RA Vinothkumar R., Singh A.K., Chakraborty S.;
RT "Molecular diversity of begomoviruses causing leaf curl disease of chillies
RT in India";
RL Unpublished.
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RN [2]
RP 1-2749
RA Vinothkumar R., Singh A.K., Chakraborty S.;
RT ;
RL Submitted (09-SEP-2011) to the INSDC.
RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru
RL University, New Mehrauli Road, New Delhi, Delhi 110067, India
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FH Key Location/Qualifiers
FH
FT source 1. .2749
FT /organism="Chilli leaf curl Multan virus"
FT /segment="DNA-A"
FT /host="chilli"
FT /isolate="Nagpur"
FT /mol_type="genomic DNA"
FT /country="India"
FT /collected_by="S Chakraborty"
FT /collection_date="14-Dec-2009"
FT /clone="BamH I-5"
FT /db_xref="taxon:546025"
FT gene 149. .514
FT /gene="AV2"
FT CDS 149. .514
FT /codon_start=1
FT /gene="AV2"
FT /product="pre-coat protein"
FT /protein_id="AGA60285.1"
FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVENTYSPDTLGYDLIRDL
FT ISVIRARNYVEATSRYNHFHSRLEGTPPSQLRQPICQPCCCPHCPRHKVKSMGQQAHES
FT EAQDVQDVQEPRCSKRM"
FT gene 309. .1079
FT /gene="AV1"
FT CDS 309. .1079
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AGA60284.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKSRAWA
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPNDKPQDFGEVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN"
FT gene complement(1076. .1480)
FT /gene="AC3"
FT CDS complement(1076. .1480)
FT /codon_start=1
FT /gene="AC3"
FT /product="REn"
FT /protein_id="AGA60288.1"
FT /translation="MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNRPFFRNRDI
FT INVQIRFNQNLRKALGIHKCFLTFRIWTTLQPRTGHFLRVFRTQVLRVLNNFAVISINN
FT VIRAADHVLWNVLQHTVYVQQSYSIKFNLY"
FT gene complement(1221. .1625)
FT /gene="AC2"
FT CDS complement(1221. .1625)
FT /codon_start=1
FT /gene="AC2"
FT /product="TrAP"
FT /protein_id="AGA60287.1"
FT /translation="MRPSSPSQAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR
FT CHGYGFTHRGTHHCSSSREWRVYLGDNKSPVFQDNRAPQQAILPEPRHHQRADTVQSKP
FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI"
FT gene complement(1528. .2613)
FT /gene="AC1"
FT CDS complement(1528. .2613)
FT /codon_start=1
FT /gene="AC1"
FT /product="REP"
FT /protein_id="AGA60286.1"
FT /translation="MPRAGRFNINAKNYFLTYPNCSLSKEEALSQLQNLETPVNKLYIR
FT VCRELHENGEPHLHVLLQFEGKYQCTNNRFFDLISSSRSAHFHPNIQRAKSSSDVKAYV
FT EKDGDFIDFGVFQIDGRSARGGCQSANDAYAEAINSGSKSSALNILREKAPKDYVLQFH
FT NLNANLDRIFTPPLEVYVSPFCSSSFDQVPGELEVWAAENVVGAAARPLRPMSIVLEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKHWALKNATFFTLAGPL
FT YSGSNQSAAQAGQEGDQASSR"
FT gene complement(2163. .2456)
FT /gene="AC4"
FT CDS complement(2163. .2456)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4"
FT /protein_id="AGA60289.1"
FT /translation="MGNLIYTCSSNSRENINAQTTDSSTSFPHPGQHISIRTFRELRAL
FT QMSKPTWKKTETSLTLEFSRSMADQLEEVANLPTTHMPRQSIQGPSPRPSIF"
XX
SQ Sequence 2749 BP; 753 A; 578 C; 631 G; 787 T; 0 other;
jn663865 Length: 2749 02-JAN-2013 Type: N Check: 3269 ..
1 accggatggc cgcgattttt tttaccatgg tccccaccac acgcactaac
51 ggacaaatac acgtggacca atgaaattgg ctcctcgttg cttaattatt
101 gaatggtcct ctatataaac ttggtcccca agtagtgcac tctttccaat
151 gtgggatcca ttagtaaacg agtttcctga aaccgttcac ggttttaggt
201 gtatgttagc cgttaaatat ctgcagttag tagaaaatac gtattctcca
251 gatactctgg ggtacgattt aatcagggat ttaatttcag ttattagggc
301 tagaaattat gtcgaagcga ccagcagata taatcatttc cactcccgcc
351 tcgaaggtac gccgccgtct caacttcgac agcccatatg ccagccgtgc
401 tgctgccccc attgtccgcg tcacaaagtc aagagcatgg gccaacaggc
451 ccatgaatcg gaagcccagg atgtacagga tgtacaggag cccagatgtt
501 ccaagaggat gtgaaggccc atgtaaggtc cagtcgtttg agtctagaca
551 cgatgtagtt catataggca aggtcatgtg tattagtgat gttacccgtg
601 gtactgggtt aacccataga gtaggtaagc gcttctgtgt taagtctgtg
651 tatgtattag ggaagatatg gatggatgag aatatcaaga ctaagaatca
701 cacgaatagt gtgatgttct tccttgtacg tgatcgtcgt ccaaatgata
751 aaccacaaga ttttggagag gtgttcaaca tgtttgacaa cgagcctagt
801 actgcaactg tgaagaatat gcatagggat cgttatcagg ttttgaggaa
851 atggcacgca acggttaccg gtggacagta tgcttcgaag gaacaggcat
901 tagttaagaa gttcgttagg gttaacaatt atgttgtgta taaccagcag
951 gaagctggga aatatgaaaa tcacacagag aatgctctga tgttgtacat
1001 ggcatgtacc catgcctcta accctgtgta tgctactttg aagatacgga
1051 tctatttcta cgattcagta tcgaattaat aaagattgaa ttttattgaa
1101 tacgactgtt gtacatatac agtgtgttgt aatacattcc ataatacatg
1151 atcagctgcc ctaattacat tatttatgga aattacagca aaattattta
1201 aaacacgcaa cacttgggtc ctaaataccc ttaagaaatg accagtccga
1251 ggctgtaagg tcgtccagat tcggaaggtt agaaaacatt tgtgtatccc
1301 caacgctttc ctcaggtttt gattgaaccg tatctgcacg ttgatgatgt
1351 ctcggttccg gaagaatggc ctgttgtggt gctcggttat cttgaaatac
1401 aggggatttg ttatctccca gataaacacg ccattctctg cttgagctgc
1451 agtgatgggt tcccctgtgc gtgaatccat agccgtggca gcgtaatgcg
1501 atgaaatagg agcagccgca atctaggtca acgcgacgac gcctggtccc
1551 cttcttggcc agcctgtgct gcactttgat tggaacctga gtagagtggg
1601 cctgcgaggg tgaagaaggt cgcatttttt aaagcccaat gtttgagtgc
1651 ggaattcttc tcctcatcca agaactcttt atagctggaa ttgggtcctg
1701 gattgcagag gaagatagcg ggaattccac ctttaatttg aactggcttt
1751 ccgtatttcg tatttgattg ccagtccctt tgggccccca tgaattcttt
1801 aaagtgtttt agataatgcg gatcaacgtc atcaatgacg ttataccacg
1851 catcattgct gtacacctta gggctaaggt ctaggtgacc acataggtag
1901 ttatgtggac ccaatgacct agcccacatg gtcttccctg tacgactatc
1951 accctctagc acaatactca tgggtctcaa aggccgcgca gcggcaccca
2001 ccacattctc ggcagcccag acttcaagtt ctccaggaac ttgatcaaaa
2051 gaagaagaac aaaaaggaga aacataaacc tccaacggag gtgtaaaaat
2101 cctatctaaa ttagcattta aattgtgaaa ttgtaaaaca taatctttgg
2151 gagccttttc ccttaaaata ttgagggccg aggacttgga ccctgaattg
2201 attgcctcgg catatgcgtc gttggcagat tggcaacctc ctctagctga
2251 tctgccatcg atctggaaaa ctccaaagtc aatgaagtct ccgtcttttt
2301 ccacgtaggc tttgacatct gaagagctct tagctctctg aatgttcgga
2351 tggaaatgtg ctgaccggga tgaggaaatg aggtcgaaga atctgttgtt
2401 tgtgcattga tattttccct cgaattggag gagcacgtgt agatgaggtt
2451 ccccattctc gtgcaattct ctgcaaaccc taatatataa tttattaact
2501 ggagtttcta agttttgtaa ttgggaaagg gcctcttctt tactaagaga
2551 gcaattggga taagttagga aataattttt tgcatttata ttgaatctgc
2601 cagcacgagg cattttggtg gacactctaa ttctctgtaa tcggtggaat
2651 gggggacctt atatatggtg tccaccatat ggcatacttg taattaccat
2701 gtaagttcca atcaatttcc cgccaatcgc ggccatccgc attaatatt