Sequence of DPV Soybean dwarf virus
Soybean dwarf virus MD6-Y pea passage 8, complete genome.
ACC No: JN674406
Dated: 2012-10-15 | Length: 5862 | CRC: -855029505
ID JN674406; SV 1; linear; genomic RNA; STD; VRL; 5862 BP.
XX
AC JN674406;
XX
DT 15-OCT-2012 (Rel. 114, Created)
DT 15-OCT-2012 (Rel. 114, Last updated, Version 1)
XX
DE Soybean dwarf virus MD6-Y pea passage 8, complete genome.
XX
KW .
XX
OS Soybean dwarf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
XX
RN [1]
RP 1-5862
RA Gildow F.E., Stone A.L., Sherman D.J., Damsteegt V.D., Schneider W.L.;
RT "Host Adaptation of Soybean Dwarf Virus Following Serial Passages on Pea
RT (Pisum sativum) and Soybean (Glycine max)";
RL Unpublished.
XX
RN [2]
RP 1-5862
RA Tian B.;
RT ;
RL Submitted (12-SEP-2011) to the INSDC.
RL Plant Pathology, The Pennsylvania State University, 410 Buckhout Lab, Penn
RL State University, State College, PA 16802, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .5862
FT /organism="Soybean dwarf virus"
FT /host="white clover"
FT /isolate="MD6-Y"
FT /mol_type="genomic RNA"
FT /country="USA:Maryland, Prince George's County, Beltsville"
FT /isolation_source="symptomless leaves"
FT /collection_date="01-Jun-2006"
FT /PCR_primers="fwd_name: sbdv5utr, fwd_seq:
FT ggttagcagcagtgtcrcaatacaacgacg, fwd_name: sbdv5utr,
FT fwd_seq: ggttagcagcagtgtcrcaatacaacgacg, fwd_name:
FT sbdv900myf, fwd_seq: gaaaatgatgagaagggtcag, fwd_name:
FT sbdv1540f, fwd_seq: gacccactctcctgaggaactt, fwd_name:
FT sbdv1235uf, fwd_seq: gtttgaatccccgttttct, fwd_name:
FT sbdv2771uf, fwd_seq: ctttcaattgcgagtgtagc, fwd_name:
FT sbdv3621f, fwd_seq: cgcagaatgctaaataggt, fwd_name:
FT sbdv4571f, fwd_seq: ccacctaaagggttcctatc, fwd_name:
FT sbdv3234yf, fwd_seq: tttcaaaggacggcatcaat, fwd_name:
FT sbdv4336uf, fwd_seq: gttctcagtaygttaggaaaacg, fwd_name:
FT sbdv5514yf, fwd_seq: gcttctggtgattacactgccg, rev_name:
FT sbdv-md1090ur, rev_seq: gtactggtcatgtcaagctct, rev_name:
FT sbdv1434ur, rev_seq: cctcatttcctttcccaacg, rev_name:
FT sbdv2126r, rev_seq: gtgtggtatgatgcactactac, rev_name:
FT sbdv2512r, rev_seq: cctgcgttccaaaagagac, rev_name:
FT sbdv2959yr, rev_seq: agaagcaaaacctgatagg, rev_name:
FT sbdv-nucp, rev_seq: cccggttctccgtctacc, rev_name:
FT sbdv4595r, rev_seq: ccttgataggaaccctttag, rev_name:
FT sbdv5534r, rev_seq: cggcagtgtagtcaccagaag, rev_name:
FT sbdv5071yr, rev_seq: cgtcttgcggaggctacc, rev_name:
FT sbdv5775ur, rev_seq: cgaggagagccctcgag, rev_name:
FT sbdv412yr, rev_seq: aacaggcgctcaaattcgt"
FT /note="pea passage 8 yellowing strain"
FT /db_xref="taxon:12049"
FT 5'UTR 1. .144
FT CDS join(145. .1221,1221. .2828)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="AFP55349.1"
FT /translation="MFNFDSLVSATAKVVKDFIHFCYNRARHVYYALKRWLWELQGVFA
FT AHDAFVDMCYDAMYGVEEFEWELQKQFSSAEHDVLIAKHEFERLLRDGAPLRTWPQPCA
FT PIGSFRSSDDFQEAAREAENLSLMDPEPSLIKGSGDYSLDNPNRIEKFINLVQKKEVLS
FT ATEQMIRHAYEEHIGEAPFGKWFNTLPSRMNYIKRAASKKAKAVKRSNSVRQMVNEVNV
FT IPDFISICDVVQVDTGEKLPPKKDKDGEPLEPEPKLKMMRRVRSEHYGDARSYIRQHIR
FT NNNMRLIDGSDVSHATINRYALKFCENLELDLTSTAMLVDYAMTMVPIPLKNDIERAKI
FT VHSPAARQIRQELGVLNAEGFLEGLCSDSGFESPFSILGLPEIVVRSGATPRKSRSVIS
FT FLSQFTLGLDYQCPNPSLHNALVAVERRVFTVGKGNEIVLPYKNKPGIFSNLDYFRDSI
FT VNKVGCPRTHSPEELAATYHSGKRSLYNAAVQSLKKKAVERSDANVTAFLKMEKHLMCK
FT KIAPRLICPRNKRYNVELGRRLKFNEKKFMHAIDSTFESPTVLSGYDSFRVGKIIANKW
FT SKFKRPVAIGVDASRFDQHVGVEALQWEHSIYNGAFKDPILKELLHWQTENRIMLFVED
FT KILKFKVKGHRMSGDINTSSGNKLIMCGMMHYYFKTLGVKAELCNNGDDCVIICERKDE
FT NKFRHMHSWFKDYGFDMQIETPVYKIGQIEFCQSKPVKINGYYRMVRKPESISKDAHSL
FT ISMASAEDVKTFMSATAQCGMILNSGVPVLDAYHKCLFKASGYKKVSQEAIERIVSFGT
FT QDKLGLRKERVEEPITMDNRLSYWESNGVDPQTQVLVERYFDNLTVHIEPRGVKRLTPL
FT LDKTLLSIASVARKSVSLPILSK"
FT CDS 3036. .5207
FT /codon_start=1
FT /transl_except=(pos:3636. .3638,aa:OTHER)
FT /product="CP readthrough product"
FT /protein_id="AFP55350.1"
FT /translation="MVAVSNVTIQRRRTRRAARRAPRVQLMAIPTATSRPQRRGRQRRR
FT RRSNRGGSYISGGSGKAHTFVFSKDGINGSSKGSITFGPSLSECKPLSDGILKAYHEYK
FT ITSILLQFITEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTRAINGLE
FT WHDTSEDQFKIHYKGNGDSKIAGSFKISINVLTQNAKXVDGEPGPKPGPDPTPPPAPPP
FT EPTPAKHERFIVYTGTMSTLISARQNSDSISLYSIRDQRIRYIEDENANWTNIKAQWYS
FT QNSVEAVPMFIYPVPQGTWSIEISCEGYQATSSTTDPHRGKSDGMIAYDDDQNKVWNIG
FT VQNNVTITNNKADADWKYGHPDLTINGERFDQKQVVEKDGTISFHLVTTGPNASFFLAG
FT PAVKKTAKYNFCISYGAWTDRDMEFGLVSVVLDEHLEGVRGSQYVRKTLRPGHVSVNRS
FT HRLQDCFTPVEYVSDEDSSSSSSSIVSNRPSTPDHDSDAQFAESLRGKLPSQTKLPPKG
FT FLSRLSAKEKEEISSSKPSNVERQVGPLVAAYGYPSQTGVYDAAREILQAKEAAENLAE
FT LERDLKEINRLEPPDTIVQEEIPDFIPPSEKVIQEDDPDYVPPIWRNADQAVTIAKSDH
FT IDWSRPAYESGDPPKKAGTLKGALSKLGGSLRSGESSLRGSLRKTQDQIDLDDKLSKLS
FT VIQRSQYQRILNNLGKMRARAYIDGLDLN"
FT CDS 3036. .3638
FT /codon_start=1
FT /product="capsid protein"
FT /protein_id="AFP55351.1"
FT /translation="MVAVSNVTIQRRRTRRAARRAPRVQLMAIPTATSRPQRRGRQRRR
FT RRSNRGGSYISGGSGKAHTFVFSKDGINGSSKGSITFGPSLSECKPLSDGILKAYHEYK
FT ITSILLQFITEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTRAINGLE
FT WHDTSEDQFKIHYKGNGDSKIAGSFKISINVLTQNAK"
FT CDS 3052. .3621
FT /codon_start=1
FT /product="movement protein"
FT /protein_id="AFP55352.1"
FT /translation="MSQYNDDALVGQQDALHEFSSWLFQRPPADHNAEDDNDDEGEVIE
FT EEAIFPEDQARLTHSCFQRTASMVVPREVSLSGRLYQNASHSLMEYSRPTMNIRSRVSY
FT YSSSPRPLPPRQAPSLMSLTHTASTPKFNRYLTNSVSQRAVRRDSPQELSTASNGMIPV
FT KINSRSTIRGTETPRSQAPSRSRSMS"
XX
SQ Sequence 5862 BP; 1745 A; 1247 C; 1364 G; 1506 T; 0 other;
jn674406 Length: 5862 15-OCT-2012 Type: N Check: 4340 ..
1 agtaaagttg acacctttac agaagtgatc ttgcttgtaa gagttaattc
51 atcaagagtt aatacaagat ccacctcccg gcaccttcgt atcgtgtttg
101 aggtatctct agtgtttggt tgtttgaata ctaggtaata cttaatgttt
151 aattttgata gtttagtgtc ggccaccgcc aaggtggtca aagattttat
201 acatttttgt tataataggg cgaggcacgt atattatgcc ctcaaacgct
251 ggctctggga actccagggt gtgtttgctg cacatgacgc ttttgtcgac
301 atgtgctacg acgccatgta tggcgtcgag gagtttgaat gggagctgca
351 aaagcagttc tcaagtgctg aacatgacgt gctaatcgcc aagcacgaat
401 ttgagcgcct gttaagggat ggcgctccgt taaggacatg gccacaacca
451 tgtgctccca tcggtagctt ccggtcgtct gatgacttcc aagaggctgc
501 cagggaagct gaaaacctgt ccttgatgga tccggaaccc tccttgatta
551 aagggtccgg tgattactca cttgacaatc ctaataggat tgaaaagttt
601 atcaacctcg ttcaaaagaa ggaggtactt tccgccaccg agcaaatgat
651 tagacatgct tatgaagagc atatcggtga ggcaccattc ggaaagtggt
701 tcaacacact gccctctcgc atgaattaca ttaaaagggc tgcttcaaag
751 aaggccaagg cggtaaagag atctaactca gtccgtcaaa tggtaaatga
801 ggtaaatgtc atccctgact ttatctcaat ttgtgatgtt gtccaggtag
851 acactggtga gaagctcccc cccaagaaag acaaagacgg ggagccatta
901 gagcctgaac ctaaattgaa aatgatgaga agggtcaggt ccgagcacta
951 tggtgatgct cgttcataca taaggcagca tattcgcaac aataacatgc
1001 gccttattga cggctctgat gttagccatg ctaccatcaa ccgatatgct
1051 cttaagttct gcgaaaactt agagcttgac ctgaccagta ctgcaatgct
1101 ggttgattat gctatgacaa tggtgcccat tcccctcaag aatgacattg
1151 aacgggcgaa gattgtccat tctcctgcag ccaggcagat aaggcaggag
1201 ttgggcgttc taaacgctga ggttttttag aggggctctg ctccgactct
1251 ggttttgaat ccccgttttc tattttgggg ttaccagaga tcgtggtgcg
1301 tagtggagct acacctagga agagtcgtag tgtaattagc tttctttcgc
1351 agtttacttt aggtctagat taccagtgtc caaatcccag cttacacaat
1401 gcactggtgg cggttgaacg tagagtattc accgttggga aaggaaatga
1451 gatagtgcta ccttacaaga acaagccagg aatattttcc aatcttgatt
1501 actttcgcga ctccatagtc aacaaagttg gttgtccaag gacccactct
1551 cctgaggaac ttgccgcaac gtaccactct ggaaagagaa gtttgtacaa
1601 tgctgctgtt caaagcctta aaaagaaggc agtcgaaagg agtgatgcta
1651 acgtgacagc ctttctcaag atggagaaac atctgatgtg taagaagata
1701 gcacccaggt tgatatgtcc ccgaaacaaa aggtacaatg ttgaattggg
1751 acgtcggttg aagtttaatg agaagaaatt catgcatgca atcgactcaa
1801 cctttgaatc cccaactgtt cttagtggat atgacagttt cagagttggg
1851 aagataatag ccaataaatg gtccaaattt aagagaccag ttgcgatagg
1901 tgttgatgcg agcagatttg atcaacatgt gggggtagaa gcactccaat
1951 gggagcactc gatttacaac ggtgcattta aagatcccat tctcaaggag
2001 ttgctacact ggcaaacaga gaacagaatt atgctgtttg ttgaagacaa
2051 aatcctcaag tttaaggtca aaggacacag gatgtccggc gacattaaca
2101 cctcttctgg caacaaatta atcatgtgtg gtatgatgca ctactacttc
2151 aagacacttg gagtcaaagc cgaactctgc aataacggcg atgattgtgt
2201 gatcatatgt gagcggaaag atgaaaataa attccgacac atgcatagct
2251 ggtttaaaga ctatgggttt gacatgcaga ttgagactcc tgtctacaag
2301 attggacaga tagagttttg tcaaagtaaa ccggttaaga ttaatggcta
2351 ttatagaatg gtgcgtaaac cagagagcat atccaaagac gcccattccc
2401 tcatttccat ggcatcagct gaagatgtca aaactttcat gagtgcaacc
2451 gcccaatgcg gtatgatctt gaatagtggt gtacctgttc ttgatgctta
2501 tcacaaatgc ctatttaaag catcggggta caagaaggta tcgcaagaag
2551 caatagaaag aatagtctct tttggaacgc aggacaaact cgggctcagg
2601 aaagagcgag ttgaggaacc aataacaatg gataataggt tgagttattg
2651 ggagtccaat ggggttgacc ctcagacaca ggtccttgtc gaacgatatt
2701 ttgacaatct gacggtccat atcgaacccc gcggcgtaaa gagattgacg
2751 cctttactag ataaaacttt gctttcaatt gcgagtgtag cacgaaaatc
2801 tgtgtcgcta ccaatacttt caaaatagaa gcactcatag taaccatagt
2851 aataatagta ctagtagtag ttagtttgtt agattacgct agttcataca
2901 gataaattgc aacggattac aaattcctat caggttttgc ttctggattc
2951 atttccagca ttcctgtatc aatattggca atttattttg tctacctaaa
3001 aatttcaaag aatctgcgag agataatcaa cgagtatggt cgcggttagc
3051 aatgtcacaa tacaacgacg acgcactcgt agggcagcaa gacgcgctcc
3101 acgagttcag ctcatggcta ttccaacggc caccagcaga ccacaacgca
3151 gaggacgaca acgacgacga aggagaagta atagaggagg aagctatatt
3201 tccggaggat caggcaaggc tcacacattc gtgttttcaa aggacggcat
3251 caatggtagt tccaagggaa gtatcacttt cgggccgtct ctatcagaat
3301 gcaagccact ctctgatgga atactcaagg cctaccatga atataagatc
3351 acgagtatct tattacagtt catcaccgag gcctcttcca cctcgtcagg
3401 ctccatcgct tatgagcttg acccacactg caagtactcc gaaattcaat
3451 cgctacttaa caaattcagt atcacaaaga gcggttcgaa gagattcccc
3501 acaagagcta tcaacggcct cgaatggcat gataccagtg aagatcaatt
3551 caagatccac tataagggga acggagactc caagatcgca ggctccttca
3601 agatctcgat caatgtccta acgcagaatg ctaaataggt agacggagaa
3651 ccggggccga aaccaggtcc ggaccccaca cccccaccag caccaccacc
3701 tgaaccgacg ccagccaaac acgagagatt cattgtttac accggtacta
3751 tgtcaacact catcagtgct agacagaact cagatagtat atcactctac
3801 tcaatcagag atcagaggat cagatacatc gaggatgaaa atgcgaactg
3851 gacgaacatt aaggcgcaat ggtattcaca gaactctgtg gaagccgtgc
3901 ctatgtttat ttacccagtt ccacaaggta catggtcaat tgaaatctct
3951 tgtgaaggtt accaggcaac atcaagcacc acagatcccc atcgggggaa
4001 atctgatgga atgattgctt atgatgatga tcaaaacaag gtgtggaata
4051 ttggtgtgca aaataatgta accataacca acaacaaagc cgatgccgat
4101 tggaaatacg gtcaccctga tctgacgatc aatggtgaac gttttgacca
4151 aaagcaagta gtcgagaaag atggaacaat ttcgtttcat ttagtaacta
4201 ctgggcctaa cgcgagtttc ttcttagctg gccctgccgt taagaagact
4251 gccaagtaca acttctgtat atcatatgga gcttggacag accgcgatat
4301 ggagtttggt ttggtatcag ttgttctcga tgaacattta gagggtgtta
4351 gaggttctca gtatgttagg aaaacgctaa gaccaggtca tgttagcgtc
4401 aatcgttctc accgattgca agactgtttc acaccagtgg aatatgtcag
4451 tgatgaggat agtagtagta gtagtagtag tatagttagt aatcgaccat
4501 caactccgga tcatgatagt gatgcccaat ttgctgaatc tctcagaggt
4551 aagcttccgt ctcagactaa gctaccacct aaagggttcc tatcaaggtt
4601 aagcgctaaa gaaaaagaag aaatctcctc ttcaaaaccc tcaaatgttg
4651 agcgccaggt tggtcctctt gttgcagctt atggataccc gtctcaaaca
4701 ggtgtttacg atgctgccag agagatcctg caagctaaag aagccgcaga
4751 aaacttggca gaattagaaa gggatttgaa agagatcaat aggctagaac
4801 caccggatac aatagttcag gaagaaatcc ctgacttcat accgccatcg
4851 gagaaagtga tccaggaaga tgatcctgat tacgtacctc ctatatggcg
4901 taatgccgac caggctgtta cgattgctaa aagcgatcat atagactgga
4951 gtcggccagc ttatgagtca ggtgatccac ctaagaaggc aggtacactc
5001 aagggtgctc tctctaaatt aggagggtct cttagaagtg gagaatcgtc
5051 tcttagaggt agcctccgca agacgcaaga tcaaattgat ttagacgaca
5101 aattgtctaa acttagtgtt atccaaagga gtcaatacca gcggatttta
5151 aataacctag ggaaaatgcg tgcgcgagca tacatcgatg gtttagattt
5201 aaattagtat agtagaagta agtgtgcgct ttccatcaca ttgaattgga
5251 gccaaccttg gtgagttgct gtcgtgggat cctccgacac aggttcggtg
5301 aacaaaaagc cggtaatctc gggcgttcgt cagacgccgt cgtatcaaca
5351 cagtatgcat atccatcaat aacccaattt tcttagtgac taaaaattag
5401 tgttagtttt tccgcctctc ttgtaaacca catacaagat gcgagcttgt
5451 ggagagtacc atcccttgaa taaggatggt tgaaagtttc tggtcccaat
5501 ccattgatca aaattggcac tgcttctggt gactacactg ccgctggcga
5551 tacagcgtaa acaatttcta cttcttgttc gatgaaacga gaacaattag
5601 taaagtcttg ccgttcacat gtctatttga cggtactagg cttcgtccct
5651 ctgatgacgt taaatgaaag cggagtaaac cgacatcacc ttactaggtt
5701 gggttaacct agggaaaccg ggaaaatgcc cgggacactt ggtttagtgg
5751 attttaaact cgagggctct tcctcgttaa aaagggggta gccaggttga
5801 aaactggcac tagggagcga tccctctttg ttgttaaggt ggctttgtgt
5851 ccacctgccc cc