Sequence of DPV Potato virus Y

Potato virus Y isolate Pep1 polyprotein gene, partial cds.

ACC No: JN703796

Dated: 2012-02-19 | Length: 1378 | CRC: 32195567

                
ID   JN703796; SV 1; linear; genomic RNA; STD; VRL; 1378 BP.
XX
AC   JN703796;
XX
DT   19-FEB-2012 (Rel. 111, Created)
DT   19-FEB-2012 (Rel. 111, Last updated, Version 1)
XX
DE   Potato virus Y isolate Pep1 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Potato virus Y
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1378
RA   Cheng Y.H., Chen C.C., Chang C.A.;
RT   "Identification and molecular characterization of an isolate of Potato
RT   virus Y from sweet pepper in Taiwan";
RL   Unpublished.
XX
RN   [2]
RP   1-1378
RA   Cheng Y.H., Chen C.C., Chang C.A.;
RT   ;
RL   Submitted (20-SEP-2011) to the INSDC.
RL   Plant Pathology Division, Agricultural Research Institute, No. 189,
RL   Zhongzheng Rd., Wufong, Taichung, Taiwan 41301, Taiwan
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1378
FT                   /organism="Potato virus Y"
FT                   /host="Capsicum annuum L."
FT                   /lab_host="Nicotiana benthamiana"
FT                   /isolate="Pep1"
FT                   /mol_type="genomic RNA"
FT                   /country="Taiwan"
FT                   /isolation_source="leaves"
FT                   /collected_by="Y. H. Cheng"
FT                   /collection_date="08-Sep-2010"
FT                   /identified_by="Y. H. Cheng"
FT                   /db_xref="taxon:12216"
FT   CDS             <1. .1050
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="AFA43811.1"
FT                   /translation="MIEAWGYHELTHQIRRFYSWLLQQQPFAAIAQEGKAPYIASMALR
FT                   KLYMDRAVDAEELRAFTEMMVALDDEFECDSFEVHHQANDTIDAGENNKKDAKPAQGSI
FT                   QPSSTKGKDKDVNAGTSGTHTVPRIKAITSKMRMPKSKGAAALNLEHLLEYAPQQIDIS
FT                   NTRATQSQFDTWYEAVRMAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGNEQ
FT                   VEYPLKPIVENAKPTLGQIMAHFSDVAEAYIEMRNKKEPYMPRYGLIRNLRDVSLARYA
FT                   FDFYEVTSRTPVRAREAHIQMKAAALKSAQPRLFGLDGGISTQEENTERHTTEDVSPSM
FT                   HTLLGVRNM"
FT   mat_peptide     247. .1047
FT                   /product="coat protein"
XX
SQ   Sequence 1378 BP; 426 A; 250 C; 342 G; 360 T; 0 other;

jn703796 Length: 1378  19-FEB-2012  Type: N  Check: 5849  ..

       1  atgatagagg cgtggggtta tcatgaacta acacaccaaa tcaggagatt
      51  ttactcatgg ttattgcaac agcaaccttt tgcagcgata gcgcaggaag
     101  ggaaggctcc ttatatagca agcatggcgt tgaggaaact gtatatggat
     151  agggctgtgg atgcggaaga gctaagagcc ttcactgaaa tgatggttgc
     201  attagacgat gagtttgagt gtgactcttt tgaagtacac catcaagcaa
     251  atgacacaat tgatgctgga gagaataata agaaagatgc gaaaccagca
     301  cagggtagca tccagccaag ttctactaaa gggaaggata aggacgtgaa
     351  tgccggcaca tctggaacac atactgtacc aagaataaag gctattacgt
     401  caaaaatgag aatgcccaaa agcaagggag cagccgcact aaatttagaa
     451  cacttgcttg agtacgctcc acaacaaatt gatatttcaa atactcgagc
     501  aactcaatca cagtttgata cgtggtatga ggcagtgcgg atggcatacg
     551  acataggaga aactgagatg ccaactgtga tgaatgggct tatggtttgg
     601  tgcattgaaa atggaacctc gccaaatatc aacggagttt gggttatgat
     651  ggatgggaat gaacaagttg agtacccgct gaaaccaatc gttgagaatg
     701  caaaaccaac ccttgggcaa atcatggcac atttctcaga tgttgcagaa
     751  gcgtatatag aaatgcgcaa caaaaaggaa ccatacatgc cacgatatgg
     801  tttaattcga aacctgcggg atgtgagttt agcacgttat gcctttgact
     851  tttatgaagt cacatcacga acaccagtga gggctaggga agcgcacatt
     901  caaatgaagg ccgcagcatt gaaatcagcc caacctcgac ttttcgggtt
     951  ggacggtggc atcagtacac aagaggagaa cacagagagg cacaccaccg
    1001  aggatgtctc tccaagtatg catactctac ttggagtcag gaacatgtga
    1051  tgtagtgtct ctccggacga tatataagta tttacatatg cagtaagtat
    1101  tttggctttt cctgtactac ttttatcata attaataatc agtttgaata
    1151  ttattaatag atagaggtgg cagggtgatt tcgtcattgt ggtgactcta
    1201  tcttttaatt ccgcattatt aagttttaga taaaagtgcc gggttgtcgt
    1251  tgttgtggat gattcatcga ttaggtgatg ttgcgattct gtcgtagcag
    1301  tgactatgtc tggatctatc cgcttgggtg atgttgtgat ttcgtcatag
    1351  cagtgactgt aaacttcaat caggagac