Sequence of DPV Papaya leaf curl virus
Papaya leaf curl virus-[soybean: Lucknow] segment DNA-A, complete sequence.
ACC No: JN807765
Dated: 2013-04-10 | Length: 2746 | CRC: 731977604
ID JN807765; SV 2; linear; genomic DNA; STD; VRL; 2746 BP.
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AC JN807765;
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DT 13-FEB-2012 (Rel. 111, Created)
DT 10-APR-2013 (Rel. 116, Last updated, Version 2)
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DE Papaya leaf curl virus-[soybean: Lucknow] segment DNA-A, complete sequence.
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KW .
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OS Papaya leaf curl virus-[soybean: Lucknow]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2746
RA Raj S.K., Srivastava A., Snehi S.K., Kumar S.;
RT "Papaya leaf curl virus associated with yellow mosaic disease on Soybean in
RT India";
RL Unpublished.
XX
RN [2]
RP 1-2746
RA Raj S.K., Srivastava A., Snehi S.K., Kumar S.;
RT ;
RL Submitted (28-SEP-2011) to the INSDC.
RL Plant Molecular Virology, CSIR-National Botanical Research Institute, Rana
RL Pratap Marg, Lucknow, U. P. 226001, India
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RN [3]
RC Sequence update by submitter
RP 1-2746
RA Raj S.K., Srivastava A., Snehi S.K., Kumar S.;
RT ;
RL Submitted (04-APR-2013) to the INSDC.
RL Plant Molecular Virology, CSIR-National Botanical Research Institute, Rana
RL Pratap Marg, Lucknow, U. P. 226001, India
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CC On Apr 8, 2013 this sequence version replaced gi:374922592.
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FH Key Location/Qualifiers
FH
FT source 1. .2746
FT /organism="Papaya leaf curl virus-[soybean: Lucknow]"
FT /segment="DNA-A"
FT /host="Glycine max (soybean)"
FT /isolate="soybean"
FT /mol_type="genomic DNA"
FT /country="India"
FT /collected_by="Ashish Srivastava"
FT /collection_date="16-Sep-2011"
FT /db_xref="taxon:1143698"
FT gene 150. .506
FT /gene="AV2"
FT CDS 150. .506
FT /codon_start=1
FT /gene="AV2"
FT /product="pre-coat protein"
FT /protein_id="AGI65155.1"
FT /translation="MWDPLLNDFPESLHGFRCMLAIKYLQQVQENYSPDTLGYDLFRDL
FT ISVIRARNYVEATSRYIHFHARFEGTPPSQLRQPVCEPCCCPHCPRHQSKSMDQPPHVE
FT ETSVLPTVYVPRCP"
FT gene 310. .1080
FT /gene="AV1"
FT CDS 310. .1080
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /note="involved in encapsidation of virion"
FT /db_xref="GOA:H6V7U8"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:H6V7U8"
FT /protein_id="AFA26438.2"
FT /translation="MSKRPADIFISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWT
FT NRPMWRKPRFYRLYMSPDVPRGCEGPCKVQSFEQRHDIAHTGKVICISDVTRGNGITHR
FT IGKRFCIKSVYITGKVWMDENIKSKNHTNSVMFFFVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVENVHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH
FT SENALMLYMACTHASNPVYATLEIRIYFYDSETN"
FT gene complement(1077. .1481)
FT /gene="AC3"
FT CDS complement(1077. .1481)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /note="increases viral replication"
FT /db_xref="GOA:H6V7U9"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:H6V7U9"
FT /protein_id="AFA26439.2"
FT /translation="MDSRTGELITAAQAENGVFIWEIQNPLYFKITEHHNRPFTMKEDI
FT IKVQIQFNYNLRKALGMHKCFLVYRIWMTSQPQTGRFLRVFKTQVLKYLDNLGVISINN
FT VIRSVDHVLWDVLQHIVYVEQSYSIKFNIF"
FT gene complement(1222. .1626)
FT /gene="AC2"
FT CDS complement(1222. .1626)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcription activator protein"
FT /note="transcriptional activator for virus sense genes"
FT /db_xref="GOA:H6V7V0"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:H6V7V0"
FT /protein_id="AFA26440.1"
FT /translation="MRPSSPSKAHSTQVPIKVQHRLAKKGNRRRRVDLPCGCSYFIALA
FT CHNHGFTHRGTHHCSSSREWRVYLGDSKSPIFQDNRTPQPSIHNERRHNQSPNTVQLQP
FT EESVGDAQVFSSLPNLDDFTASDWSFLKGL"
FT gene complement(1529. .2614)
FT /gene="AC1"
FT CDS complement(1529. .2614)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication-associated protein"
FT /note="involved in virus replication"
FT /db_xref="GOA:H6V7V1"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:H6V7V1"
FT /protein_id="AFA26441.2"
FT /translation="MPRLNSFCVNAKNIFLTYPKCPIPKEQMLEILQSINCPSDKLFIR
FT VAQEKHQDGSLHIHALIQFKGKSKFRNTRHFDVTHPNNSTQFNPNFQGAKSSSDVKSYI
FT EEDSDYIDWGQFQIDGRYGRGGQQTANDAAAEALNAGSADAALAINREKLPKDFILQFH
FT NLNCNLSRIFTEPTQAYESPFLSSSFNQVPEELEEWAVENVMGAAARTLRPMSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNIIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNAALKNWALKNATFITLEGPL
FT YSGSNQSAAQASQEGEQTSSC"
FT gene complement(2200. .2457)
FT /gene="AC4"
FT CDS complement(2200. .2457)
FT /codon_start=1
FT /gene="AC4"
FT /product="C4 protein"
FT /protein_id="AGI65156.1"
FT /translation="MGLCISMPSSSSKVNPSSETPDISMSLTLITPPNSTQTSRELSPA
FT LMSSPTSRRTVITSTGVSFRSMEDMVEEVNRQLMMQQQRP"
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SQ Sequence 2746 BP; 759 A; 546 C; 597 G; 844 T; 0 other;
jn807765 Length: 2746 10-APR-2013 Type: N Check: 1547 ..
1 taatattacc ggatggccgc gatttcttta gtgggccctt aacgcattaa
51 ctgacaagga catgcgaacc aatcatatga cacgctcaaa gcctaattgt
101 tttttggtcc cttatttaaa cttcgtcccc aagtattttc ttttgcacaa
151 tgtgggatcc attgttgaac gactttcccg aatcactgca tggattccgg
201 tgcatgttgg caataaagta tttgcagcaa gttcaagaga attattctcc
251 tgacacatta ggttacgatt tatttaggga tttaatttca gttattaggg
301 ctagaaatta tgtcgaagcg accagcagat atattcattt ccacgcccgc
351 ttcgaaggta cgccgccgtc tcaacttcga cagcccgtat gtgagccgtg
401 ctgctgcccc cattgtccgc gtcaccaaag caaaagcatg gaccaaccgc
451 cccatgtgga ggaaacctcg gttttaccga ctgtatatgt ccccagatgt
501 ccctagaggt tgtgagggac catgtaaagt tcaatcattt gagcaaaggc
551 atgatattgc ccacacaggc aaagttattt gcatatctga cgttactaga
601 ggtaatggaa ttacacatcg tattggcaaa cgattttgca tcaagtccgt
651 gtacattact ggtaaggttt ggatggacga aaatattaag tccaaaaatc
701 acactaacag tgttatgttt tttttcgtta gggatcgtag gcctgtggat
751 aaaccacagg attttggaga ggtatttaac atgtttgata atgagcccag
801 tacggctact gtggagaatg ttcatcgtga taggtatcaa gttcttcgga
851 aatggcatgc aactgttact ggtggacaat atgcgtcaaa ggaacaagcc
901 ctcgtcaaga agtttgttag ggttaataat tatgttgtat ataaccagca
951 agaggctggc aagtatgaga atcattctga gaatgcgtta atgttgtata
1001 tggcatgtac tcatgcctct aacccagtgt atgctacttt ggagatacgg
1051 atctatttct atgattccga aacaaattaa aaaatattaa attttattga
1101 atatgattgt tctacatata caatgtgttg taatacatcc cataaaacat
1151 gatcaactga tctgattaca ttattaatac tgataactcc taaattatct
1201 aaatatttta aaacttgagt cttaaagacc cttaagaaac gaccagtctg
1251 aggctgtgaa gtcatccaga ttcggtagac tagaaaacac ttgtgcatcc
1301 ccaacgcttt cctcaggttg tagttgaact gtatttggac tttgattatg
1351 tcttctttca ttgtgaatgg acggttgtgg tgttctgtta tcttgaaata
1401 taggggattt tgaatctccc agataaacac gccattctct gcttgagctg
1451 cagtgatgag ttcccctgtg cgtgaatcca tgattgtgac aggctagtgc
1501 tatgaaatat gaacatccac aggggagatc aacacgacga cgtctgttcc
1551 ccttcttggc tagcctgtgc tgcactttga ttggaacctg agtagagtgg
1601 gccttcgagg gtgatgaagg tcgcattttt taaagcccaa ttcttgagtg
1651 cagcattctt ctcttcatcc aagaactctt tataactgga attgggtcct
1701 ggattgcaga ggaagatagt gggaattccg cctttaattt gaactggctt
1751 tccgtacttt gtatttgatt gccagtccct ttgggccccc atgaattctt
1801 taaagtgctt taggtagtgg ggatcgacgt catcaatgat gttgtaccag
1851 gcatcattat tgtagacctt tgggctaagg tctagatgtc cacacaaata
1901 attatgtgga cccaaagacc tagcccacat cgtctttcct gttctactat
1951 caccctctat gacaatactc atgggtctca aagtccgcgc agcggcaccc
2001 attacattct caacagccca ttcttcaagt tcttcaggaa cttgattaaa
2051 agaagaagat aaaaaaggcg actcataagc ctgtgtaggc tctgtgaata
2101 tccgagacaa attacaattt aaattatgaa attgtaaaat aaaatccttt
2151 gggagttttt ccctatttat tgctaaagct gcgtcagctg aacctgcatt
2201 tagggcctct gctgctgcat cattagctgt ctgttgacct cctcgaccat
2251 atcttccatc gatctgaaac tgaccccagt cgatgtaatc actgtcctcc
2301 tcgatgtagg acttgacatc agagctggac ttagctccct ggaagtttgg
2351 gttgaattgg gtggagttat tagggtgagt gacatcgaaa tgtctggtgt
2401 ttctgaactt ggatttacct ttgaactgga tgagggcatg gatatgcaga
2451 gacccatctt ggtgtttttc ttgtgccact ctgataaata atttatcaga
2501 tgggcaattt attgactgaa gaatctcgag catttgctct ttgggtattg
2551 ggcattttgg ataagtgagg aagatatttt tggcattaac acaaaaagag
2601 ttaagacgag gcatattgaa ttggggacac tcaaaactct gaggaatggg
2651 ggactctggg gacgcattta tatggtgtcc ccaaatggct ttttcgtaat
2701 tttgaaagaa aattcaaaat tcaaaatccc aaagcggcca tccgta