Sequence of DPV Tomato yellow leaf curl Malaga virus
Tomato yellow leaf curl Malaga virus isolate Portugal:Algarve 2:2001, complete genome.
ACC No: JN859135
Dated: 2012-11-30 | Length: 2782 | CRC: 939326986
ID JN859135; SV 1; circular; genomic DNA; STD; VRL; 2782 BP.
XX
AC JN859135;
XX
DT 30-NOV-2012 (Rel. 115, Created)
DT 30-NOV-2012 (Rel. 115, Last updated, Version 1)
XX
DE Tomato yellow leaf curl Malaga virus isolate Portugal:Algarve 2:2001,
DE complete genome.
XX
KW .
XX
OS Tomato yellow leaf curl Malaga virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2782
RA Fiallo-Olive E., Trenado H.P., Louro D., Navas-Castillo J.;
RT "First detection and diversity of recombinant species of the tomato yellow
RT leaf curl virus complex in Portugal";
RL Unpublished.
XX
RN [2]
RP 1-2782
RA Fiallo-Olive E., Trenado H.P., Louro D., Navas-Castillo J.;
RT ;
RL Submitted (14-OCT-2011) to the INSDC.
RL Fruticultura Subtropical y Fitopatologia, Instituto de Hortofruticultura
RL Subtropical y Mediterranea 'La Mayora', Estacion Experimental La Mayora,
RL Algarrobo-Costa, Malaga 29750, Spain
XX
FH Key Location/Qualifiers
FH
FT source 1. .2782
FT /organism="Tomato yellow leaf curl Malaga virus"
FT /host="tomato"
FT /isolate="Portugal:Algarve 2:2001"
FT /mol_type="genomic DNA"
FT /country="Portugal"
FT /collection_date="Mar-2001"
FT /db_xref="taxon:219744"
FT gene 142. .489
FT /gene="V2"
FT CDS 142. .489
FT /codon_start=1
FT /gene="V2"
FT /product="precoat protein"
FT /protein_id="AFQ60608.1"
FT /translation="MWDPLLNEFPDSVHGLRCMLAIKYLQLVEETYEPNTLGHDLIRDL
FT ISVIRARDYAEANRRYTNFNARLEGSSKTELRQPVYQPCCCPHCPRHQASIMDLQAHVS
FT KAADVQNVQKP"
FT gene 302. .1078
FT /gene="V1"
FT CDS 302. .1075
FT /codon_start=1
FT /gene="V1"
FT /product="coat protein"
FT /protein_id="AFQ60609.1"
FT /translation="MPKRTGDILISTPVSKVRRKLNFDSPYTSRAAAPTVQGIKRRSWT
FT YRPMYRKPRMYRMYRSPDVPFGCEGPCKVQSYEQRDDVKHTGVVRCVSDVTRGSGITHR
FT VGKRFCIKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPMDFGQVFNMFDNE
FT PSTATVKNDLRDRYQVMRKFHATVVGGPSGMKEQCLLKRFFKVNTHVVYNHQEQAKYEN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT gene complement(1072. .1476)
FT /gene="C3"
FT CDS complement(1072. .1476)
FT /codon_start=1
FT /gene="C3"
FT /product="replication enhancement protein"
FT /protein_id="AFQ60610.1"
FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFTITRHNQQPFNSKYNL
FT LTFQIRFNHNLRKALGIHKCFLNFRIWTTLQSPTGHFLRIFRFQVYKYLNNIGVISLNN
FT VIRAVDYVLFDVFENTIDVIEQHEIKYNLY"
FT gene complement(1217. .1624)
FT /gene="C2"
FT CDS complement(1217. .1624)
FT /codon_start=1
FT /gene="C2"
FT /product="transactivator protein"
FT /protein_id="AFQ60611.1"
FT /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHL
FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPIFHDNQTQPTTIQQQIQFTNISNQVQPQ
FT LEEGTGDSQMFSQLPHLDDLTVSDWSFFKNL"
FT gene complement(1533. .2612)
FT /gene="C1"
FT CDS complement(1533. .2612)
FT /codon_start=1
FT /gene="C1"
FT /product="replication associated protein"
FT /protein_id="AFQ60612.1"
FT /translation="MAPPKRFQINCKNYFLTYPKCSLTKEEALSQLKDLETPTNKKYIK
FT VCRELHENGEPHLHVLIQFEGKFKCQNQRFFDLVSPSRAAHFHPNIQGAKSSSDVKSYV
FT DKDGDTVDWGEFQIDGRSARGGQQSANDAYAAALNSGSKSEALRIIKELIPKDYILQFH
FT NLNSNLDRIFQEPPAPYISPFLSSSFNQVPDELEVWVSENVVSSAARPWRPNSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPL
FT FASINQGPTQDSQEETNKA"
FT gene complement(2153. .2455)
FT /gene="C4"
FT CDS complement(2153. .2455)
FT /codon_start=1
FT /gene="C4"
FT /product="C4 protein"
FT /protein_id="AFQ60613.1"
FT /translation="MGNHISMCLSNLKGNSSAKISDSSTWYPQAGQHISIQTFRELNPV
FT QTSSLMSIRTETPSTGVSFRSTDDLHVGVSSQPMTLTPQLLTQAVSRRLLESLKN"
XX
SQ Sequence 2782 BP; 767 A; 524 C; 617 G; 874 T; 0 other;
jn859135 Length: 2782 30-NOV-2012 Type: N Check: 3443 ..
1 accggatggc cgcgctcccc ggtaaagtag tgggccctac gaactaattt
51 gtgtcgacca atgaaaatgc agcctcaaag cttaaataat gtatttactt
101 tgttataaac ttggcttcta agttttgaaa aaaccatcaa tatgtgggat
151 cctttattaa atgaatttcc agattcagtt catggtctcc gttgtatgct
201 tgcaataaaa tatttgcagc tagttgaaga aacctatgaa cccaatactc
251 tgggtcacga tctaattagg gatctcattt ccgtcattcg tgctcgtgac
301 tatgccgaag cgaaccggcg atatactaat ttcaacgccc gtctcgaagg
351 ttcgtcgaaa actgaacttc gacagcccgt ataccagccg tgctgctgcc
401 cccactgtcc aaggcatcaa gcgtcgatca tggacttaca ggcccatgta
451 tcgaaagccg cggatgtaca gaatgtacag aagccctgat gtcccctttg
501 gttgtgaagg tccttgtaaa gtccagtcgt atgagcagcg tgacgacgtc
551 aagcataccg gtgttgttcg ttgtgttagt gatgtaacta ggggttctgg
601 tattacacat agagtaggta aacggttttg tattaagtca atctatattt
651 tagggaagat ttggatggat gaaaatataa aaaaacaaaa tcatactaac
701 caggtcatgt tctttttagt acgagaccga aggccgtatg gaactagtcc
751 tatggatttt ggtcaagttt ttaacatgtt tgataatgaa cctagtacgg
801 ctactgtgaa gaacgattta agggataggt accaagtaat gaggaagttc
851 catgccacgg tggtaggtgg tccgtcaggg atgaaggagc agtgtctgtt
901 gaagaggttt tttaaagtta atacccatgt agtttataat catcaagagc
951 aggcgaagta tgaaaaccat actgagaatg cgttgttgtt gtatatggca
1001 tgtactcatg cttctaaccc agtgtatgct acgttgaaaa tacgtatcta
1051 tttttatgat gctgtaacaa attaataaag attgtatttt atttcatgtt
1101 gttcaattac atctattgtg ttctcaaata catcgaataa gacataatca
1151 actgctctaa taacattgtt taatgaaatt acacctatat tattcaaata
1201 cttatacact tgaaacctaa agattcttaa aaaatgacca gtcggagact
1251 gtaaggtcgt ccagatgcgg aagttgagaa aacatttgtg aatccccagt
1301 gccttcctca agttgtggtt gaacctgatt tgaaatgtta gtaaattgta
1351 tttgctgttg aatggttgtt ggttgtgtct ggttatcgtg aaatataggg
1401 gattgtttat ctcccagata aaaacgccat tctctgcttg aggagcagtg
1451 atgagttccc ctgtgcgtga atccatgatt gttgcagttg aggtggaggt
1501 agtatgagca gccacagtct aggtctacac gcttacgcct tattggtttc
1551 ttcttggcta tcttgtgttg gaccttgatt gatacttgcg aacagtggct
1601 cgtagagggt gacgaaggtt gcattcttga gagcccaatt tttcaaggat
1651 atgttttttt cttcgtctag atattcccta tatgaggagg taggtcctgg
1701 attgcagagg aagatagtgg gaattccccc tttaatttga atgggcttcc
1751 cgtactttgt gttgctttgc cagtccctct gggcccccat gaattccttg
1801 aagtgcttta aataatgcgg gtctacgtca tcaatgacgt tgtaccatgc
1851 atcattactg tacacctttg gacttaggtc tagatgtcca cataaataat
1901 tatgtgggcc tagagacctg gcccacattg ttttgcctgt tctgctatca
1951 ccctcaatga caatactatt aggtctccat ggccgcgcag cggaagacac
2001 gacgttctcg gacacccata cttcaagttc atctggaact tgattaaaag
2051 atgaagataa aaagggagaa atataaggag ccggaggctc ctgaaaaatt
2101 ctatctaaat tactatttaa attatgaaat tgtaaaatat aatctttcgg
2151 tattaattct ttaatgattc taagagcctc cgacttactg cctgagttaa
2201 gagctgcggc gtaagcgtca ttggctgact gctgaccccc acgtgcagat
2251 cgtccgtcga tctgaaactc accccagtcg acggtgtctc cgtccttatc
2301 gacataagac ttgacgtctg aactggattt agctccctga atgtttggat
2351 ggaaatgtgc tgccctgctt ggggatacca ggtcgaagaa tcgctgattt
2401 tggcacttga atttcccttc aaattggata agcacatgga gatgtggttc
2451 cccattctcg tggagttctc tgcaaacttt gatgtatttt ttatttgttg
2501 gggtttctag gtcttttaat tgggaaagtg cttcttcttt cgttaaggag
2551 cacttaggat atgtgaggaa ataatttttg caatttattt ggaagcgctt
2601 agggggagcc atatggtcaa tgagtaccga ttgaccaaga tttttacact
2651 tatccctggt gtatcggtac tcaatatata gtgagtacca aatggcattt
2701 tggtaatttt gtaaaagtac attgcaattc aaaattcaaa attcaaaaat
2751 caaatcatta aagcggtcat ccgtataata tt