Sequence of DPV Potato virus Y
Potato virus Y isolate N484_1 polyprotein-like gene, partial sequence.
ACC No: JN936421
Dated: 2012-10-25 | Length: 7787 | CRC: -1228925863
ID JN936421; SV 1; linear; genomic RNA; STD; VRL; 7787 BP.
XX
AC JN936421;
XX
DT 25-OCT-2012 (Rel. 114, Created)
DT 25-OCT-2012 (Rel. 114, Last updated, Version 1)
XX
DE Potato virus Y isolate N484_1 polyprotein-like gene, partial sequence.
XX
KW .
XX
OS Potato virus Y
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-7787
RA Visser J.C., Bellstedt D.U.;
RT "The molecular and biological characterization of South African isolates of
RT PVYNTN: implications for pathogenicity determinants";
RL Unpublished.
XX
RN [2]
RP 1-7787
RA Visser J.C., Bellstedt D.U.;
RT ;
RL Submitted (26-OCT-2011) to the INSDC.
RL Department of Biochemistry, Stellenbosch University, Lab 165, JC Smuts
RL Building, Van der Bijl Street, Stellenbosch, Western Cape 7600, South
RL Africa
XX
FH Key Location/Qualifiers
FH
FT source 1. .7787
FT /organism="Potato virus Y"
FT /host="Solanum tuberosum"
FT /strain="O"
FT /isolate="N484_1"
FT /mol_type="genomic RNA"
FT /country="South Africa"
FT /collection_date="11-Sep-2007"
FT /db_xref="taxon:12216"
FT misc_feature <1. .7506
FT /note="similar to polyprotein"
XX
SQ Sequence 7787 BP; 2371 A; 1428 C; 1846 G; 2102 T; 40 other;
jn936421 Length: 7787 25-OCT-2012 Type: N Check: 3462 ..
1 agctcgaaag atggtaatta tgtgtatccc tgttgttgca caacacttga
51 tgatggttca gctattgaat caacattcta tccaccaact aaaaagcacc
101 ttgtaatagg caatagtggt gaccaaaaat ttgttgattt accaaaaggg
151 gattcggaga tgttatacat tgccaagcag ggttattgtt atattaacgt
201 gtttcttgca atgctgatta acattagcga ggaggatgca aaggacttca
251 caaagaaagt tcgcgacatg tgtgtgccga agcttggaac ctggccaact
301 atgatggatt tggcgaccac ttgtgctcaa atgagaatat tctatcctga
351 cgtgcatgat gcagaactgc ctagaatatt ggtcgaccat gacactcaaa
401 cgtgtcatgt ggttgactca tttggctcac aaacaactgg atatcatatt
451 ctaaaagcat ccagcgtgtc tcaactcatc ttgtttgcaa atgatgaatt
501 agaatctgat ataaaacatt atagagttgg tggtgttcct aatgcatgcc
551 ctgaacttgg gtccacaata tcacctttca gagaaggagg agttgtaatg
601 tctgagtcgg cagcgttgaa actgctttta aagggaattt ttagacctaa
651 ggtgatgaga cagttgctgt tagatgagcc ttacctgttg attctatcaa
701 tattatctcc tggcatactg atggctatgt ataacaatgg gatttttgaa
751 cttgcggtaa ggttgtggat taatgagaaa caatccatag ctatgatagc
801 atcactacta tcagctttag ccctacgagt gtcagcggca gaaacactcg
851 tcgcacagag gattatcatt gatgccgcag ctacagacct ccttgatgct
901 acgtgtgatg ggttcaacct acatctaacg taccctactg cattgatggt
951 gttgcaagtt gttaagaata gaaatgaatg tgatgatacc ctattcaagg
1001 cgggttttcc aagttacaac acgagtgttg tgcagattat ggaaaaaaat
1051 tatctaagtc tcttggacga tgcttggaaa gatttaactt ggcgggaaaa
1101 attatccgca acatggtact catacagagc aaaacgctct atcactcggt
1151 acataaaacc cacaggaagg gcagatttga aagggttata caacatatca
1201 ccacaagcat tcttgggccg aagcgcccag gtggtcaaag gtactgcctc
1251 aggattgagc gagcgattta ataattattt caatactaag tgtgtaaata
1301 tttcatcctt tttcattcgt agaatcttta ggcgtttgcc aacttttgtc
1351 acttttgtca actcattatt ggttattagt atgttaacta gcgtagtggc
1401 agtgtgtcag gcaataattt tagatcagag gaagtatagg agagaaatcg
1451 agttgatgca gatagagaag aatgagattg tctgcatgga gctatatgca
1501 agtttacagc gcaaacttga acgcgatttc acatgggatg agtacattga
1551 gtatttgaaa tcagtaaacc ctcagatagt tcagtttgct caagcgcaga
1601 tggaagaata tgatgtgcga caccagcgtt ccacaccagg tgttaaaaat
1651 ttggaacaag tagtagcatt tatggcttta gtcatcatgg tgttcgatgc
1701 tgaaaggagt gattgcgtgt tcaaaactct caataaattt aagggtgtcc
1751 tttcttcaat ggactatgaa gttagacatc agtccttaga cgatgtgatc
1801 aagaatttcg atgagaggaa tgagattatt gattttgaat tgagtgagga
1851 cacaattcga acatcatcag tgctagatac aaagtttagt gattgggtgg
1901 gacgacaant ccagatggga catacacttc cacattacag aaccgagggg
1951 cacttcatgg aatttacaag agcaactgct gttcaagtgg ctaatgacat
2001 tgcccatagc gaacacctag acttcctaga agggggagct gttgggtctg
2051 gaaagtcaac tgggttgcct gttcatctta gtgtagctgg atctgtgctt
2101 ttgattgaac caacgcgacc actagcggag aacgttttca aacagctatc
2151 tagtgaacca ttcttcaaga agccaacact gcgtatgcgt ggaaatagta
2201 tatttggctc ttctccaatc tccgtcatga ctagtggatt tgcgctacac
2251 tactttgcca ataatcgctc tcaattagct cagttcaact ttgtaatatt
2301 tgatgagtgc catgttctgg atccttccgc aagggcgttc cgcattttgc
2351 tgagtgttta tcatcaagca tgcaaagtat taaaagtgtc agctactcca
2401 gtgggaagag aggttgaatt cacaacacag cagccagtca agttaatagt
2451 ggaagacaca ctgtctttcc aatcatttgt tgatgcacaa ggttctaaaa
2501 ctaatgctga tgttgttcag tttggttcaa acgtacttgt gtacgtgtcg
2551 agctacaatg aagttgatac cttggctaag ctcctaacag acaagaatat
2601 gatggtcaca aaggttgatg gcagaacaat gaagcacggt tgcctagaaa
2651 ttgtcacaaa aggaaccagt gcgagaccac attttgttgt agcaaccaac
2701 ataattgaga atggagtgac tttggacata gacgtagttg tggactttgg
2751 gttgaaagtc tcaccgttct tggacattga caacaggagc attgcttaca
2801 ataaggtgag tgttagctat ggtgagagaa ttcaaaggct gggtcgtgtt
2851 ggacgcttca agaaaggagt agcattgcgt attggacaca ctgagaaggg
2901 aattattgaa attccaagca tggtcgctac tgaggcggct cttgcttgct
2951 ttgcatataa cttgccagtg atgacaggag gcgtctcaac tagtctgatt
3001 ggtagttgta ctgtgcgcca agttaaaaca atgcagcaat ttgaattgag
3051 tcccttcttt atccagaatt tcgttgctca tgatggatca atgcatcctg
3101 tcatacatga cattcttaaa aagtataaac ttcgagattg tatgacacct
3151 ttgtgcgatc agtctatacc atacagggca tcgagcactt ggttatcggt
3201 cagtgaatat gagcgacttg gagtggcctt agaaattcca aagcaagtca
3251 aaattgcatt ccatatcaaa gagattcctc ctaagctcca cgaaatgctt
3301 tgggaaacgg ttgttaaata caaagacgtt tgcttatttc caagcattcg
3351 agcatcgtcc atcagcaaaa tcgcatacac attgcgtaca gacctctttg
3401 ccatcccaag aactctaata ttagtggaga gattgcttga agaggagcga
3451 gtgaagcaga gccaatttag aagtctcatc gatgaagggt gctcaagcat
3501 gttttcaatt gtcaacttga caaacactct cagagctaga tatgcaaaag
3551 attacaccgc agagaacata caaaaactng agaaagtgag aagtcaatta
3601 aaagaattct cgaatctgga tggttctgca tgtgaggaaa atttaataaa
3651 gaggtatgag tctttgcagt tcgttcatca ccaagctgcg acgtcacttg
3701 caaaggatct caagttgaag gggacttgga agaagtcatt aggggctaaa
3751 gatttgatca tagcaggtgc cgttgcaatt ggtggtatag gactcatata
3801 tagttggttc acacagtcag ttgagactgt gtctcaccaa gggaaaaata
3851 aatccaaaaa aatccaagcc ttgaagtttc gccatgctcg tgacaaaagg
3901 gctggctttg aaattgacaa caatgatgac acaatagagg aattctttgg
3951 ctctgcatac aggaaaaagg gaaaaggcaa aggtaccaca gttggtatgg
4001 gcaagtcaag caggaggttc atcaacatgt atgggtttga tccaacagag
4051 tactcattca tccaattcgt tgatccactc accggggctc aaatagaaga
4101 gaatgtctat gctgacatta gagatattca agagagattt agtgaagtgc
4151 gaaagaagat ggttgagaat gatgacgttg aaatgcaagc cttgggtagt
4201 aacacgacca ttcatgcata cttcaggaaa gattggtctg acaaagcttt
4251 gaagattgat ttaatgccac acaatccact caaagtttgt gacaagacaa
4301 atggcattgc caaatttcct gagagagagc tcgaactaag gcagactggg
4351 ccagctgtag aagtcgacgt gaaggacata ccagcacagg agggagnntc
4401 agtctagcta tcgctcatga gaggcttgag agacttcaac ccaattgccc
4451 aaacagtttg taggctgaaa gtatcagttg aatatgggac atcagagatg
4501 tacggttttg ggtttggagc atacataata gcgaaccacc atttgttcag
4551 gagttacaat ggttccatgg aggtgcgatc catgcacggt acattcaggg
4601 tgaagaatct acacagtttg agcgttctgc caattaaagg tagggatatc
4651 atcctcatca aaatgccgaa agatttccct gtctttccac aaaaattgca
4701 tttccgagct cctacacaga atgaaagagt ttgtttagtt ggaaccaact
4751 ttcaggagaa gtatgcatcg tcgatcatca cagaaacaag cactacttac
4801 aatataccag gcagcacatt ctggaagcat tggattgaaa cagataatgg
4851 acactgtgga ctaccagtgg tgagcaccgc cgatggatgt ctagtcggaa
4901 ttcacagttt ggcaaacaat aaacacacca cgaactacta ctcagccttc
4951 gatgaagact ttgaaagcaa gtacctccgg accaatgagc acaatgaatg
5001 ggtcaagtct tggatttata atccagacac agtgttgtgg ggcccgttga
5051 gacttaaaga cagcactccc aaagggttat tcaaaacaac aaagcttgtg
5101 caagatctaa tcgatcatga tgaagtggtg gagcaagcta agcattctgc
5151 gtggatgttt gaagccttga caggaaattt gcaagctgtc gcaacaatga
5201 agagccagtt agtgaccaag catgtagtta aaggagagtg tcgacacttc
5251 aaagaattcc tgactgtgga tgcagaagca gaggcnnnnn nattcttcag
5301 gcctttgatg gatgcgtatg ggaagagctt actgaataga gatgcgtata
5351 tcaaggacat aatgaagtat tcaaaaccta tagatgttgg tattgtggac
5401 tgtgatgcat ttgaagaagc catcaatagg gttatcatct acctgcaagt
5451 gcacggcttc aagaagtgtg catatgtcac tgacgagcaa gaaattttca
5501 aagcgctcaa catgaaagct gcagtcggag ccatgtatgg tggcaaaaag
5551 aaagactatt ttgagcattt cactgatgca gataaggaag aaatagtcat
5601 gcaaagctgt ctgcgattgt ataaaggctt gcttggcatt tggaatggat
5651 cattgaaggc agagctccgg tgtaaggaaa agatacttgc aaataagacg
5701 aggacattca ctgctgcacc tttagacact ttgctgggtg gtaaagtgtg
5751 tgttgatgac ttcaataatc aattttattc aaagaatatt gaatgctgtt
5801 ggacggttgg gatgactaag ttttatggtg gttgggataa actgctgcgg
5851 cgtttacctg annnnnnnnn nnnnnnnnnn nnnnnnnatg gctcacagtt
5901 tgaaagttca ctaactccat acttaatcaa tgctgttctc accatcagaa
5951 gcacatacat ggaagattgg gatgtggggt tgcaaatgtt gcgcaattta
6001 tacactgaga ttgtttacac acctatttca actccagatg gaacaattgt
6051 taagaagttc agaggaaata acagtggtca gccttctact gttgtggaca
6101 actctcttat ggtcgtcctt gccatgcact atgctctcat caaagaatgc
6151 attgagtttg aagagattga cagcacgtgc gtgttctttg tcaatggtga
6201 tgatttgctg attgctgtga atccggataa agagggcatt cttgacagat
6251 tgtcacaaca cttctcagat cttggtttga attatgattc tncgtcaaga
6301 acaagaaata aggaggagtt gtggtttatg tctcatagag gcctactgat
6351 tgagggcatg tacgtgccga aacttgaaga agaaaggatt gtgtccattc
6401 tccaatggga cagggcagac ttggctgaac acaggcttga ggcgatttgc
6451 gcagctatga tagagtcctg gggttattct gaactaacac accaaatcag
6501 gagattctac tcatggttat tgcaacagca accctttgca acaatagcgc
6551 aggaagggaa ggctccttat atagcaagca tggcattaag gaaattgtat
6601 atggataggg ctgtggatga ggaagagctg agagccttca ctgaaatgat
6651 ggtcgcatta gacgatgagt ttgaatttga ctcttatgaa gtataccatc
6701 aagcaaatga cacaatcgat gcaggaggaa gcagcaagaa agatgcaaga
6751 ccagagcaag gcagcatcca gtcaaacccg aacaaaggaa aagataagga
6801 tgtgaatgct ggtacatttg ggacacatac tgtgccgaga atcaaggcta
6851 tcacgtccaa aatgagaatg cccaaaagca agggagcaac cgtgctaaac
6901 ttagaacact tgcttgagta tgctccacaa caaattgata tttcaaatac
6951 tcgggcaact caatcacagt ttgatacgtg gtatgaggca gtgcggatgg
7001 catacgacat aggagaaact gagatgccaa ctgtaatgaa tgggcttatg
7051 gtttggtgca ttgaaaatgg aacctcgcca aatgtcaacg gagtttgggt
7101 tatgatggat gggaatgaac aagttgagta cccgttgaaa ccaatcgttg
7151 agaatgcaaa accaaccctt aggcaaatca tggcacattt ctcagatgtt
7201 gcagaagcgt atatagaaat gcgcaacaaa aaggaaccat atatgccacg
7251 atatggttta attcgaaatc tgcgggatgt gggtttagcg cgttatgcct
7301 ttgactttta tgaggtcaca tcacgaacac cagtgagggc tagggaagcg
7351 cacattcaaa tgaaggccgc agcattgaaa tcagcccaac ctcgactttt
7401 cgggttggac ggtggcatca gtacacaaga ggagaacaca gagaggcaca
7451 ccaccgagga tgtctctcca agtatgcata ctctacttgg agtcaagaac
7501 atgtgatngt agtgtctctc cggacgatat ataagtattt acatatgcag
7551 taagtatttt ggcttttcct gtactacttt tatcataatt aataatcagt
7601 ttgaatatta ctaatagata gaggtggcag ggtgatttcg tcattgtngg
7651 tgactctatc ttttaattcc gcattattaa gtcttagata aaagtgccgg
7701 gttgtcgttg ttgtggatga ttcatcgatt aggtgatgct gcgattctgt
7751 cgtagcagtg actatgtctg gatctatctg ncttgga