Sequence of DPV Papaya ringspot virus

Papaya ringspot virus P isolate BD-C10 coat protein gene, partial cds.

ACC No: JN979400

Dated: 2012-03-13 | Length: 846 | CRC: -1446257025

                
ID   JN979400; SV 1; linear; genomic RNA; STD; VRL; 846 BP.
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AC   JN979400;
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DT   13-MAR-2012 (Rel. 112, Created)
DT   13-MAR-2012 (Rel. 112, Last updated, Version 1)
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DE   Papaya ringspot virus P isolate BD-C10 coat protein gene, partial cds.
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KW   .
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OS   Papaya ringspot virus P
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-846
RA   Akhter M.S., Jain R.K., Reetika K., Basavaraj Y.B., Phaneendra C.;
RT   "Studies on genetic diversity of PRSV-P populations from Bangladesh based
RT   on coat protein";
RL   Unpublished.
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RN   [2]
RP   1-846
RA   Akhter M.S., Jain R.K., Reetika K., Basavaraj Y.B., Phaneendra C.;
RT   ;
RL   Submitted (01-NOV-2011) to the INSDC.
RL   Division of Plant Pathology, Advanced Centre for Plant Virology, Indian
RL   Agricultural Research Institute, Pusa Campus, New Delhi, Delhi 110012,
RL   India
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FH   Key             Location/Qualifiers
FH
FT   source          1. .846
FT                   /organism="Papaya ringspot virus P"
FT                   /host="papaya"
FT                   /isolate="BD-C10"
FT                   /mol_type="genomic RNA"
FT                   /country="Bangladesh:Chapai, Nawabgong"
FT                   /isolation_source="papaya leaf showing shoe string symptom"
FT                   /collected_by="M. S. Akhter"
FT                   /collection_date="10-Dec-2010"
FT                   /note="pathotype P"
FT                   /db_xref="taxon:12206"
FT   CDS             <1. .>846
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /protein_id="AFD03842.1"
FT                   /translation="SKAEAVDAGLNDKLKEKEQKEREKRKEKDEAGGGNDVSTSTKTGE
FT                   RDRDVNAGTSGTFTVPRIKLFNDKMVLPKVKGKTVLNLNHLLQYSPQQIDISNTRATQS
FT                   QFERWYEGVKNDYGLNDNEMQVMLNGLMVWCIENGTSPDISGVWVMMDGDNQVDYPIKP
FT                   LIERATPSFRQIMAHFSNAAEAYIAKRNATEKYMPRYGIKRNLTDISLARYAFDFYEVN
FT                   SKTPDRAREAHMQMKAAALRNSSRRLFGMDGSVSSKEENTERHTVDDVNRDMHSLLGMR
FT                   N"
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SQ   Sequence 846 BP; 287 A; 147 C; 212 G; 200 T; 0 other;

jn979400 Length: 846  13-MAR-2012  Type: N  Check: 1510  ..

       1  tcgaaggctg aggctgtaga tgcgggatta aacgataagc tcaaagagaa
      51  agaacagaaa gaaagagaga aaaggaaaga aaaagatgaa gctggtggcg
     101  gaaatgatgt gtcaaccagc acgaaaactg gagagagaga tagagatgtt
     151  aatgctggaa ccagtggaac ttttacagtt ccaaggatta aattattcaa
     201  tgacaagatg gttctaccaa aagttaaagg aaaaactgtc cttaatttga
     251  atcatcttct tcagtatagt ccacagcaaa ttgacatctc taatacgcgt
     301  gccacccagt ctcagtttga gagatggtac gagggggtga agaatgatta
     351  tggtcttaac gataatgaga tgcaagtgat gttgaatggc ttgatggttt
     401  ggtgtattga aaatggtaca tctccggaca tatctggtgt ctgggtaatg
     451  atggatggcg ataatcaagt cgactatcca atcaagccct tgattgaacg
     501  tgcaactcct tcatttaggc agatcatggc tcacttcagc aacgcggcag
     551  aagcgtacat cgcaaagaga aacgcaactg aaaagtacat gccgcgatat
     601  ggaatcaaaa gaaatttgac tgacattagc ctcgctagat atgctttcga
     651  tttttatgag gtgaattcaa aaacacctga tagagctcgt gaagctcaca
     701  tgcagatgaa agctgcagca ttacgaaact ctagtcgtag attatttggc
     751  atggacggta gtgtcagtag caaggaagaa aacacggaga gacacacagt
     801  ggatgatgtc aacagagaca tgcactctct cctgggtatg cgcaac