Sequence of DPV Papaya ringspot virus

Papaya ringspot virus P isolate BD-G25 coat protein gene, partial cds.

ACC No: JN979401

Dated: 2012-03-13 | Length: 843 | CRC: 405258924

                
ID   JN979401; SV 1; linear; genomic RNA; STD; VRL; 843 BP.
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AC   JN979401;
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DT   13-MAR-2012 (Rel. 112, Created)
DT   13-MAR-2012 (Rel. 112, Last updated, Version 1)
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DE   Papaya ringspot virus P isolate BD-G25 coat protein gene, partial cds.
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KW   .
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OS   Papaya ringspot virus P
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-843
RA   Akhter M.S., Jain R.K., Reetika K., Basavaraj Y.B., Phaneendra C.;
RT   "Studies on genetic diversity of PRSV-P populations from Bangladesh based
RT   on coat protein";
RL   Unpublished.
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RN   [2]
RP   1-843
RA   Akhter M.S., Jain R.K., Reetika K., Basavaraj Y.B., Phaneendra C.;
RT   ;
RL   Submitted (01-NOV-2011) to the INSDC.
RL   Division of Plant Pathology, Advanced Centre for Plant Virology, Indian
RL   Agricultural Research Institute, Pusa Campus, New Delhi, Delhi 110012,
RL   India
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FH   Key             Location/Qualifiers
FH
FT   source          1. .843
FT                   /organism="Papaya ringspot virus P"
FT                   /host="papaya"
FT                   /isolate="BD-G25"
FT                   /mol_type="genomic RNA"
FT                   /country="Bangladesh:Gazipur, Mirzapur"
FT                   /isolation_source="papaya leaf showing chlorotic leaf spot
FT                   symptom"
FT                   /collected_by="M. S. Akhter"
FT                   /collection_date="03-Jan-2011"
FT                   /note="pathotype P"
FT                   /db_xref="taxon:12206"
FT   CDS             <1. .>843
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /protein_id="AFD03843.1"
FT                   /translation="KTEAVDAGLSDKLKEKEQKEKEKKKEKDEAGGGNDVSTSTKTGER
FT                   DRDVNAGTSGTFTVPRIKLFTDKMVLPRIKGRTVLNLNHLLQYNPQQIDISNTRATQSQ
FT                   FERWYEGVRNDYGLNDNEMQVMLNGLMVWCIENGTSPDISGVWVMMDGDTQVDYPIKPL
FT                   IEHATPSFRQIMAHFSNAAEAYIAKRNATEKYMPRYGIKRNLTDTSLARYAFDFYEVNS
FT                   KTPDRAREAHMQMKAAALRNSSRRMFGMDGSVSSKEENTERHTVEDVTRDMHSLLGMRN
FT                   "
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SQ   Sequence 843 BP; 286 A; 159 C; 210 G; 188 T; 0 other;

jn979401 Length: 843  13-MAR-2012  Type: N  Check: 1166  ..

       1  aagactgagg ctgtggatgc gggcttaagc gacaagctca aagagaaaga
      51  acagaaagaa aaagagaaaa agaaagaaaa agatgaagct ggtggcggaa
     101  atgatgtgtc gaccagcacg aaaactggag agagagatag agatgttaac
     151  gctggaacca gtggaacttt tacagttcca agaataaagt tattcactga
     201  caagatggtt ctaccgagaa ttaagggaag aactgtcctt aatttgaatc
     251  atcttcttca gtataatcca cagcaaattg acatctcaaa cactcgtgcc
     301  acccagtctc agttcgagag atggtacgag ggagtgagga atgattatgg
     351  tcttaacgat aatgaaatgc aagtgatgtt aaacggctta atggtatggt
     401  gtattgaaaa tggtacatct ccagacatat ctggtgtttg ggtaatgatg
     451  gatggtgaca ctcaagtcga ctatccaatt aagcctttga ttgaacatgc
     501  aaccccttca tttaggcaaa tcatggctca cttcagcaac gcggcagaag
     551  catacatcgc aaagagaaac gcaactgaga agtatatgcc gcggtatgga
     601  atcaagagga atttgactga cactagtctc gctagatacg ctttcgattt
     651  ctacgaggtg aattcaaaaa cacctgatag agctcgcgaa gctcacatgc
     701  agatgaaagc tgcagctcta cgcaactcta gtcgtagaat gtttggcatg
     751  gacggcagtg tcagtagcaa ggaagaaaac acggagagac acacagtgga
     801  agatgtcacc agagacatgc actctctcct gggtatgcgc aac