Sequence of DPV Southern rice black-streaked dwarf virus
Southern rice black-streaked dwarf virus isolate HuNyy segment 4, complete sequence.
ACC No: JQ034351
Dated: 2012-03-20 | Length: 3571 | CRC: 2109931032
ID JQ034351; SV 1; linear; genomic RNA; STD; VRL; 3571 BP.
XX
AC JQ034351;
XX
DT 20-MAR-2012 (Rel. 112, Created)
DT 20-MAR-2012 (Rel. 112, Last updated, Version 1)
XX
DE Southern rice black-streaked dwarf virus isolate HuNyy segment 4, complete
DE sequence.
XX
KW .
XX
OS Southern rice black-streaked dwarf virus
OC Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Fijivirus;
OC unclassified Fijivirus.
XX
RN [1]
RP 1-3571
RA Zhu J.-Z., Zhou Q., Gao B.-D.;
RT "The Complete Genome Sequence of Hunan Isolate of Southern rice
RT black-streaked dwarf virus";
RL Unpublished.
XX
RN [2]
RP 1-3571
RA Zhu J.-Z., Zhou Q., Gao B.-D.;
RT ;
RL Submitted (16-NOV-2011) to the INSDC.
RL Plant Pathology, Hunan Agricultural University, Nongdalu, Changsha, Hunan
RL 410128, China
XX
CC GenBank Accession Numbers JQ034348-JQ034357 represent the complete
CC genome of Southern rice black-streaked dwarf virus isolate HuNyy.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3571
FT /organism="Southern rice black-streaked dwarf virus"
FT /segment="4"
FT /host="rice"
FT /isolate="HuNyy"
FT /mol_type="genomic RNA"
FT /country="China:Hunan, Yiyang city"
FT /collection_date="2010"
FT /db_xref="taxon:519497"
FT CDS 15. .3455
FT /codon_start=1
FT /product="P4"
FT /note="ORF4; SRBSDVs4_gp1"
FT /protein_id="AFD23318.1"
FT /translation="MLKVNVQALIYPFSGQITDIRRNQLIPTAKFKHTVLHQPIFITKL
FT KNKFSSNDAPPTRNTLRVNPVWSNAFFDWNSALLNPWTVLPSSTGSGSMSIPSHKNVES
FT GNAILKNAEFINERLPAYLKLLFDSLNLKENGYVNQFGFWALLYLDYSLHCLVPTEYYR
FT QMLNLRTKENIIFLDTYNEVEYAISYLSRFNKILYVNGHGRKFVKLPSFGKLGFTFDKD
FT TILGGIGNDLQYWTLWPLHNDYTQADTNRPNHANILRNLGQFNNELVGIHYYPTFFYEH
FT YLYFETIQELVKHQIYNVVRTYHAQLKLQDNLGTNRLERRGYYLTAYSPFYELFIDAIA
FT QEFGELYLYIQLFGAIPFNSGSPSGIPMTYSDFDSYYYRRFGHLKEFGKLTFENLTEKY
FT NRSKLKPFQLFFVYDQMYQLMQTISPSLNLKPNLELIEFEEYGDGANLEDFDVNDVSAC
FT RLIDYPLGDALPLNTLEVFPPNLFEVSEHIRMMFESRFLSPYAMYSLPLVPGGHDVLIQ
FT TDESRLSDFRKNTAQRKVFKALQKQVLNSKNIFKKFVEPNLIKSSLSSADFLFWVVYSV
FT ASSPKFTVNVKGELDVPPITADVDKLVYTSPNTSSFKLLSLFFQFLHEKTFVQLNQPMS
FT IVFLGAKSEPVADMLYRLSHENWSIQRYGNDAEWPGKKANVLSINLKNVYDVAISDMDQ
FT SIGSSVANITANTLRQLRVCLESFSKRLIFKLQYCLFHTLSSVTAILREYGAEIAASGH
FT FIKLQIIRHAWSKVGSLEIFLIIDKVKTAESIPDDKELRKVVNTLGLSEPNQLFFTYMG
FT TPRKYTLNDLNCKIFSVDITSEEMTNICSVFLNLSQCVSYGSSIYDKEHSNLTFFGTTN
FT IQRIGLFMRNKQIYKALSITGSEHKPEGIFTPSLDFVIPGVREVLVLGDAQRMVGWKML
FT KALHFDKGVLDVSLTAYDIGCRDYECAYMTVIDDDTILNYVGYDRASVLDVKRGITVVK
FT AEVNRDKLTELCGLGHVFAFNSYYMGFSTRDELEKELNYIADTLVIKGFFFISFYAMHD
FT DLKPVLKHHGFIDITSADVAADKFTFGRYHAVATVSVDFVEEWKAKMMTKYDVYQIFLS
FT ANDVSFSCIMHGYSVNLDSMYFAPVYNLVSPCFLIHPKK"
XX
SQ Sequence 3571 BP; 1107 A; 565 C; 649 G; 1250 T; 0 other;
jq034351 Length: 3571 20-MAR-2012 Type: N Check: 8453 ..
1 aagttttttt caggatgttg aaagtaaatg tgcaggccct catttatcct
51 ttcagcggac aaattacaga cattagaaga aaccaactca ttccaactgc
101 taaattcaaa cacactgtct tacatcagcc tatttttatt acaaaactta
151 aaaataaatt ctcatccaat gacgcccctc caactcgaaa cactctacga
201 gttaatcctg tttggtcaaa tgcttttttt gattggaatt cagctttatt
251 aaatccttgg actgtccttc cctcctcgac tggctctggc tcaatgtcaa
301 ttccatcaca taaaaatgtt gaatcaggca acgcaatttt gaaaaatgct
351 gaattcatta acgaacgtct tccagcttac ttaaagctgt tgtttgatag
401 tttgaatttg aaagaaaatg gatatgttaa tcaatttgga ttttgggctt
451 tattatacct agattacagt ttgcattgtc tcgtaccaac tgaatattat
501 cgccaaatgt taaatctacg aacaaaggag aacataatat ttttagacac
551 gtataatgaa gtagaatatg caatttcata tttatctcga ttcaacaaaa
601 ttttatatgt taatggtcat ggtcgaaaat tcgttaaatt gccaagcttt
651 ggaaaactag gatttacttt tgataaagac accattctag gaggaattgg
701 aaacgatctt caatattgga cattatggcc tttacacaat gactatactc
751 aagccgatac caacagacca aatcatgcga acattttacg aaatttagga
801 caattcaata atgagttagt tggtattcat tattatccta ccttttttta
851 tgaacattat ctttattttg aaaccattca agagttagtt aaacatcaaa
901 tatataacgt tgttcgtaca taccatgctc aattaaaatt acaagacaat
951 ctcggtacta atcgtttaga aagaagaggc tactatttga ctgcttacag
1001 tcccttttat gaattattca ttgacgcgat agctcaagag ttcggtgaat
1051 tatatctcta tatacaactg tttggtgcta ttccttttaa cagtggaagt
1101 cctagtggca ttcctatgac ttactcagat tttgattcct attattatcg
1151 tagatttgga catttgaaag aatttggaaa acttactttt gaaaatttaa
1201 ctgaaaaata caatagatct aaactcaaac ctttccaact gttttttgtt
1251 tatgatcaga tgtatcaact gatgcaaaca atatctccta gtttaaattt
1301 gaaacctaat cttgagctta ttgagtttga ggagtatggt gacggtgcta
1351 atttagaaga ttttgatgtt aatgatgtta gtgcatgccg gttgattgat
1401 tatcctttag gtgacgcatt acccttaaac actttagaag tattccctcc
1451 aaatttgttt gaagtttcag agcacattcg aatgatgttc gaaagccgtt
1501 ttctcagtcc ttatgcaatg tattctttgc ctttagttcc aggtggtcat
1551 gacgttttga ttcaaacaga tgagagtaga ttatccgatt ttcgtaaaaa
1601 cacagctcag aggaaagtat tcaaggcttt gcagaaacaa gttttaaatt
1651 ctaaaaacat ttttaagaaa tttgttgaac ctaatttaat aaaaagttcc
1701 ttgtcttcag ctgacttttt gttttgggtt gtttatagtg tagcatcttc
1751 accgaaattt acggtgaatg tcaaaggtga attagacgta cctccaatca
1801 cagcagacgt tgataaatta gtatacacat ctcctaatac ttcttctttc
1851 aaattattaa gcttattctt tcagtttttg catgagaaaa cttttgttca
1901 attaaatcaa cctatgagta tcgtctttct tggtgcgaag agtgaacccg
1951 ttgctgacat gttatatcgt ttatcgcatg agaattggag tattcaaagg
2001 tatggtaatg acgcggaatg gccaggtaaa aaagcaaatg ttctgtctat
2051 taatttgaaa aatgtgtatg acgtcgccat ttctgatatg gatcaaagca
2101 taggatctag tgttgcaaat attactgcga atactctaag acaattgaga
2151 gtttgtttag aatcatttag taaaagattg atttttaagt tgcaatactg
2201 tctatttcat actttgagtt cagtcactgc tattcttcgt gaatatggtg
2251 ctgagatagc tgcatcaggt cattttatta aattgcaaat cattcgtcat
2301 gcttggtcga aagtgggaag tttggaaata tttttgatta tagacaaggt
2351 taaaacagct gagtcaattc cggatgataa ggagttaagg aaagttgtga
2401 atactttagg attgagcgaa cctaatcagt tgttctttac atacatgggt
2451 acccctcgaa aatatacctt gaacgacttg aattgtaaaa tattcagcgt
2501 tgacataacc tctgaagaaa tgacaaacat ttgttctgta tttttaaatt
2551 tatctcaatg tgtcagttat ggttcttcca tttatgataa ggaacattca
2601 aatttaactt ttttcggaac gacaaatatt caaagaatcg gattgttcat
2651 gcgcaataaa caaatttaca aagctttgtc aattacaggt agtgaacaca
2701 agccagaagg aatttttaca ccctcattag attttgttat tcccggtgtt
2751 cgagaagttc tagtcttagg agatgctcaa cgtatggttg gatggaaaat
2801 gctgaaggct ttgcattttg ataaaggtgt tcttgatgtt agtttaactg
2851 catatgatat tggttgtcgt gattatgagt gtgcttatat gactgttatc
2901 gatgatgata ctattcttaa ttatgtggga tacgatagag cttctgtgct
2951 ggatgttaaa cgtggaatta cagttgttaa agctgaagtg aacagagaca
3001 agttaactga attgtgcggt ttaggacatg tcttcgcttt taattcttat
3051 tacatgggtt tttctacgag agacgaattg gagaaagaat tgaattacat
3101 tgctgataca ttagtgataa aaggtttctt tttcataagt ttttacgcaa
3151 tgcatgacga tttaaaacct gtattgaaac atcatgggtt tatagatata
3201 actagtgcgg atgtggctgc agataaattc acttttggaa gatatcatgc
3251 cgtcgctact gtcagtgtgg attttgtaga agagtggaaa gcaaaaatga
3301 tgactaaata tgacgtttat caaatctttt tatcagctaa tgatgttagt
3351 ttcagttgta tcatgcatgg ttattctgtc aatttagata gtatgtattt
3401 cgcgccggtt tataacttag tttctccttg tttcttaatt catcccaaaa
3451 aatgaacttt taatgtttgt gcatgagtct tggaaggata tgagatactg
3501 tcacatgcgc tcttccctag ccttttaaca taccgtgttg tggcggatta
3551 aacctgaaaa cagctgatgt c