Sequence of DPV Sweet potato virus C

Sweet potato virus C isolate UMP2-C coat protein gene, partial cds.

ACC No: JQ073715

Dated: 2011-12-05 | Length: 1112 | CRC: 116009965

                
ID   JQ073715; SV 1; linear; genomic RNA; STD; VRL; 1112 BP.
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AC   JQ073715;
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DT   05-DEC-2011 (Rel. 111, Created)
DT   05-DEC-2011 (Rel. 111, Last updated, Version 1)
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DE   Sweet potato virus C isolate UMP2-C coat protein gene, partial cds.
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KW   .
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OS   Sweet potato virus C
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1112
RA   Sivparsad B.J., Gubba A.;
RT   "Molecular resolution of the genetic variability of most prevalent viruses
RT   infecting sweet potato (Ipomoea batatas Lam.) in KwaZulu-Natal (KZN)";
RL   Unpublished.
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RN   [2]
RP   1-1112
RA   Sivparsad B.J., Gubba A.;
RT   ;
RL   Submitted (11-NOV-2011) to the INSDC.
RL   Plant Pathology, University of KwaZulu-Natal (UKZN), Agric Avenue,
RL   Scotsville, Pietermaritzburg, KwaZulu-Natal 3209, South Africa
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1112
FT                   /organism="Sweet potato virus C"
FT                   /host="Ipomoea batatas Lam."
FT                   /lab_host="Ipomoea setosa Ker."
FT                   /strain="C"
FT                   /isolate="UMP2-C"
FT                   /mol_type="genomic RNA"
FT                   /country="South Africa:Umphambanyomi River, KZN"
FT                   /collection_date="Jan-2008"
FT                   /db_xref="taxon:930881"
FT   CDS             <1. .948
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="AEU17209.1"
FT                   /translation="SSENTEFKDAGANPPAPKSKINPPPPTITEIVDPEDPKQEALKAA
FT                   RAKQPATIPESYGRDTSKEKESIVGTSSKGVRDKDVNVGTVGTFVVPRVKMNANKKRQP
FT                   MVNGRAIINFQHLSTYEPEQYEVANTRSTQEQFQAWYEGVKGDYGVDDTGMGILLNGLM
FT                   VWCIENGTSPNINGVWTMMDGDEQVTYPIKPLLDHAVPTFRQIMTHFSDVAEAYIEMRN
FT                   RTKAYMPRYGLQRNLTDMSLARYAFDFYELHSTTPARAKEAHLQMKAAALKNARNRLFG
FT                   LDGNVSTQEEDTERHTTTDVTRNIHNLLGMRGVQ"
FT   3'UTR           949. .>1112
XX
SQ   Sequence 1112 BP; 355 A; 209 C; 265 G; 283 T; 0 other;

jq073715 Length: 1112  05-DEC-2011  Type: N  Check: 6311  ..

       1  tctagtgaga atactgaatt taaggatgct ggagcgaacc ctccagcccc
      51  taagtctaag attaatcctc caccacctac aataactgag atcgttgatc
     101  cggaggaccc gaagcaagaa gctttaaaag ccgcacgagc aaagcaaccc
     151  gcaaccattc cagaatcata tggacgtgat acgagcaaag aaaaggagtc
     201  gatagtggga acatcatcaa agggtgtgag agataaagac gttaatgttg
     251  gcacagttgg tacatttgtt gtaccacgtg ttaagatgaa tgcaaataag
     301  aagagacaac caatggtcaa tggaagagcc attataaatt tccaacactt
     351  gtcaacatat gaaccagagc agtatgaagt tgcgaacact cgttcgaccc
     401  aagagcaatt ccaagcatgg tatgagggag ttaaagggga ttacggtgtc
     451  gacgacacag gaatggggat cttattgaat ggactaatgg tttggtgcat
     501  tgaaaatggt acatccccaa acataaatgg tgtgtggaca atgatggacg
     551  gtgatgagca agtgacatat ccaattaaac cattgttgga tcatgcagtg
     601  cctactttta ggcagattat gacgcacttc agtgacgttg ctgaagccta
     651  tatagaaatg cgaaaccgta caaaggcgta tatgccaaga tatggtctac
     701  aacgtaattt gactgatatg agtcttgcgc gatatgcatt tgatttttac
     751  gagctgcatt caactacacc tgcacgtgct aaagaagcac atttgcagat
     801  gaaggcagcc gcacttaaga atgcgcgaaa tcggttgttt ggtttggacg
     851  gaaacgtctc cacgcaagaa gaagatacgg agaggcacac gacaactgat
     901  gttactagaa atatacataa cctcttagga atgaggggtg tgcaatagga
     951  catcctctgc actgtagctt atacttatgt tatctttagt atgcctttaa
    1001  tttaaattcg tgtctttcag tcccgaagga gatggttgaa tgcataatat
    1051  ggtgggatta tatcccggtt attgcatttg agaagtcacc tttctattac
    1101  gtatcataag gg