Sequence of DPV Sangassou virus

Sangassou virus strain SA14 N protein (S) gene, complete cds.

ACC No: JQ082300

Dated: 2012-03-20 | Length: 1746 | CRC: -254173807

                
ID   JQ082300; SV 1; linear; viral cRNA; STD; VRL; 1746 BP.
XX
AC   JQ082300;
XX
DT   05-FEB-2012 (Rel. 111, Created)
DT   20-MAR-2012 (Rel. 112, Last updated, Version 2)
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DE   Sangassou virus strain SA14 N protein (S) gene, complete cds.
XX
KW   .
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OS   Sangassou virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Hantavirus;
OC   unclassified Hantavirus.
XX
RN   [1]
RP   1-1746
RX   PUBMED; 22278233.
RA   Klempa B., Witkowski P.T., Popugaeva E., Auste B., Koivogui L.,
RA   Fichet-Calvet E., Strecker T., Ter Meulen J., Kruger D.H.;
RT   "Sangassou virus, the first hantavirus isolate from Africa, displays
RT   genetic and functional properties distinct from those of other
RT   murinae-associated hantaviruses";
RL   J. Virol. 86(7):3819-3827(2012).
XX
RN   [2]
RP   1-1746
RA   Klempa B., Witkowski P.T., Popugaeva E., Auste B., Koivogui L.,
RA   Fichet-Calvet E., Ter Meulen J., Kruger D.H.;
RT   ;
RL   Submitted (28-NOV-2011) to the INSDC.
RL   Institute of Virology, Helmut-Ruska-Haus, Charite Medical School,
RL   Chariteplatz 1, Berlin 10117, Germany
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1746
FT                   /organism="Sangassou virus"
FT                   /segment="S"
FT                   /host="Hylomyscus simus"
FT                   /lab_host="Vero E6 cells"
FT                   /strain="SA14"
FT                   /mol_type="viral cRNA"
FT                   /country="Guinea"
FT                   /isolation_source="spleen"
FT                   /collection_date="2004"
FT                   /db_xref="taxon:358400"
FT   gene            46. .1335
FT                   /gene="S"
FT   CDS             46. .1335
FT                   /codon_start=1
FT                   /gene="S"
FT                   /product="N protein"
FT                   /note="nucleocapsid protein"
FT                   /protein_id="AEZ02946.1"
FT                   /translation="MATLEEIQKEINIHEGQLIIAKQKVKDAEKQYEKDPDDLNKRALS
FT                   DREGIAHSIQSKIDELRRQLADRVAAGRNLGQERDPTGVEPGDHLREKSMLSYGNVIDL
FT                   NHLDIDEPTGQTADWLSIVIYLTSFVVPILLKALYMLTTRGRQTTKDNKGMRIRFKDDS
FT                   SFEDVNGIRKPKHLFLSMPNAQSSMKAEEITPGRFRTAVCGLYPAQIKARNMVSPVMSV
FT                   IGFITLARDWTERIENWLDQPCKFMSEPSQTSLQKGPATNRDYLNQRQASLAQMETKEA
FT                   QAVRQQAVDAGCNLVDHIDSPSSIWVFAGAPDRCPPTCLFISGMAELGAFFSILQDMRN
FT                   TIMASKTVGTSEEKLRKKSSFYQSYLRRTQSMGIQLDQRIIIMFMVEWGKEAVDGFHLG
FT                   DDMDPELRSFAQALIDQKVKEISNQEPLKI"
XX
SQ   Sequence 1746 BP; 565 A; 315 C; 375 G; 491 T; 0 other;

jq082300 Length: 1746  20-MAR-2012  Type: N  Check: 8944  ..

       1  tagtagtaga ctccctaaag agcactgcaa acaaagaagg aaaaaatggc
      51  aacactagag gagatccaaa aggaaatcaa catccatgag ggtcaactaa
     101  ttatagcaaa gcaaaaggtg aaggatgctg aaaaacagta tgagaaggat
     151  cctgatgacc ttaataagag ggcactcagt gatagagaag gaattgctca
     201  ttccatccag agcaaaatag atgagttgcg gagacaactt gctgataggg
     251  ttgcagcagg acggaacctg gggcaagaac gagatccaac cggtgttgaa
     301  ccaggagatc atctcagaga aaaatccatg ctcagttatg gaaatgttat
     351  cgacttgaac catctagata ttgatgaacc aactgggcag actgcagact
     401  ggctgagtat tgtgatttac ttgacttcat ttgtggtgcc aattttgttg
     451  aaggcacttt atatgcttac aacaagaggg aggcaaacta ctaaggataa
     501  caagggaatg aggattaggt ttaaggacga cagctctttt gaagatgtca
     551  atgggattag aaagcctaag catctgtttt tatcgatgcc aaatgcacaa
     601  tctagtatga aggctgaaga aattactcca ggaagattcc gcactgcagt
     651  ttgtggattg tatccagcac agataaaagc aagaaatatg gtcagcccag
     701  tgatgagtgt tattggcttt attactctag ccagagactg gactgaaaga
     751  attgaaaatt ggcttgacca accttgcaaa tttatgtctg aaccatctca
     801  gacttcattg cagaagggcc ctgcaacaaa tagagactat ctaaaccaaa
     851  ggcaggcctc ccttgcacaa atggaaacaa aagaagctca ggctgtcaga
     901  caacaagcag ttgatgctgg ttgtaattta gtggaccaca ttgactcacc
     951  atcatcaatt tgggtatttg caggagcacc tgatcgctgt ccaccaacct
    1001  gcctgttcat atcaggtatg gctgaactag gagctttctt ttcaatactg
    1051  caggatatga gaaatacaat tatggcatca aaaactgtcg ggacatctga
    1101  ggaaaagctt aggaagaaat cgtcattcta ccagtcttac cttagaagaa
    1151  cgcaatctat gggaatacaa cttgatcaga ggataattat catgttcatg
    1201  gtggaatggg gtaaagaggc tgttgatgga tttcatcttg gtgatgatat
    1251  ggatcctgaa ctgcgatcat ttgctcaggc attgattgat cagaaagtga
    1301  aagagatatc taatcaggaa ccacttaaga tttagattat tattacctgc
    1351  ttttgattat tccaatatcc atttgcacta acttgtagaa tgtgaattat
    1401  tgctactaat tagttatata attatctgat taggggatta ttattcaatt
    1451  gcactaattt ataggatgtg aattattact actaatcagg tgcacaatca
    1501  gtgggtttgg gtgggtcatt attccgttga attactcagg gtgggcttag
    1551  gaccagtcac cttaagtgac atttttgtat atattgatgt agatatcatt
    1601  tggtaatcac taacatctat cttttcccgt ttctgtttcc tttctttact
    1651  aacaacaaca aactacctca catacatata actacctcaa cacatactac
    1701  ctcattgcgt tatttcctga atttcttttt agggagcata ctacta