Sequence of DPV Sangassou virus
Sangassou virus strain SA14 glycoprotein precursor (M) gene, complete cds.
ACC No: JQ082301
Dated: 2012-03-20 | Length: 3651 | CRC: 654320759
ID JQ082301; SV 1; linear; viral cRNA; STD; VRL; 3651 BP.
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AC JQ082301;
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DT 05-FEB-2012 (Rel. 111, Created)
DT 20-MAR-2012 (Rel. 112, Last updated, Version 2)
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DE Sangassou virus strain SA14 glycoprotein precursor (M) gene, complete cds.
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KW .
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OS Sangassou virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Hantavirus;
OC unclassified Hantavirus.
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RN [1]
RP 1-3651
RX PUBMED; 22278233.
RA Klempa B., Witkowski P.T., Popugaeva E., Auste B., Koivogui L.,
RA Fichet-Calvet E., Strecker T., Ter Meulen J., Kruger D.H.;
RT "Sangassou virus, the first hantavirus isolate from Africa, displays
RT genetic and functional properties distinct from those of other
RT murinae-associated hantaviruses";
RL J. Virol. 86(7):3819-3827(2012).
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RN [2]
RP 1-3651
RA Klempa B., Witkowski P.T., Popugaeva E., Auste B., Koivogui L.,
RA Fichet-Calvet E., Ter Meulen J., Kruger D.H.;
RT ;
RL Submitted (28-NOV-2011) to the INSDC.
RL Institute of Virology, Helmut-Ruska-Haus, Charite Medical School,
RL Chariteplatz 1, Berlin 10117, Germany
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FH Key Location/Qualifiers
FH
FT source 1. .3651
FT /organism="Sangassou virus"
FT /segment="M"
FT /host="Hylomyscus simus"
FT /lab_host="Vero E6 cells"
FT /strain="SA14"
FT /mol_type="viral cRNA"
FT /country="Guinea"
FT /isolation_source="spleen"
FT /collection_date="2004"
FT /db_xref="taxon:358400"
FT gene 41. .3448
FT /gene="M"
FT CDS 41. .3448
FT /codon_start=1
FT /gene="M"
FT /product="glycoprotein precursor"
FT /protein_id="AEZ02947.1"
FT /translation="MIMWGLLLLAAITFPCQSLKNVYDMKIECPHSVNFGESSVMGKVQ
FT LPSLSITEAEQLVPESSCNMDNHQSLSVLQKATKTTWRKKADHSNAGKDSYELITSEIQ
FT FKGVCSLTHKMIEESHRLRRSVICYDLSCNTTHCKPTLYMVVPVHSCNMMKSCLIGLGP
FT YRIQVVYERTYCTVGVLNEGKCFVPDQSVANIVKNGIFDIVSVQIICFFIRIKGSTYKI
FT LETVKTAMNGKCNGTDDKVQGYYICLLGGNSGPIYVPSGTDFRAMEALANMLRAPHGED
FT HDLPGEELASYSIAGTIEGKIPHTASSQNLEFTAYSGIPSYSSFSVHTLTQDGQLSYSP
FT GLFPNLNQSDCKKNALPLIWEGTIELPGYYEAIHPCNVFCVFSGPGASCEAFSEGGIFN
FT ITSPTCLVSKQNRFRAAEQQITFVCQRVDMDIIIYCNGQRKVILTKTLVIGQCIYSITS
FT LFSLLPSVAHSIAIELCVPGFHGWATAALLTTFCFGWLLIPSITYIVLLILKFIAAIFH
FT NTTQENKFKAILRKIKEEFEKTKGSMVCDICKYECETGKELKAHNLSCNQSQCPYCFTH
FT CEMTESAFQAHYKVCQATHRFREDLKKTITPQTISPGCYRTLNLFRYKSRCYILTVWLC
FT LLILESIAWAASASETSLNPLWTDNAHGVGSVPMHTDLELDFSLPSSSKYTYKRKLTSP
FT TNPEQAVSLHIEIESQGIAADVHSLGHWYDARLNLKTSFHCYGACTKYQYPWHTAKCHF
FT EHDFQYENSWGCNPPDCPGVGTGCTACGLYLDQLKPVGSAYKLITVRYSRKVCVQFGEE
FT NLCKTIDMNDCFMSRHVKVCIIGTVSKFSQGDTLVFLGPLEGGGLIFKDWCTSTCQYGD
FT PGDIMSPRDRGFSCPEFPGSFRKKCNFATTPVCEYSGNMVSGYKKVMATIDSFQSFNTS
FT LIHFTEERIEWKDPDGMLRDHLNILVTKDIDFENLGENPCKVGLQTSSIEGAWGSGVGF
FT TLVCQVSLIDCARFLTSIKACDMAICYGAQSVSLVRGQNTVKITGKGGHSGSSFKCCHE
FT VDCSSTGLQASAPHLDKVNGISEQENDKVYDDGAPQCGVSCWFVKSGEWISGILHGNWV
FT VVVVLVILLLFSLILLSILCPVRKHKRS"
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SQ Sequence 3651 BP; 1096 A; 679 C; 773 G; 1102 T; 1 other;
jq082301 Length: 3651 20-MAR-2012 Type: N Check: 9053 ..
1 tagtagtaga ctccacaaga aatagcagtt aagcaacagc atgatcatgt
51 ggggtttact acttctagca gccataacct tcccttgtca gtcattgaaa
101 aatgtgtatg acatgaagat tgaatgccct cattcagtca attttggtga
151 gagcagtgtg atgggaaaag tccagctgcc atcactctca atcactgagg
201 cagagcaact cgtaccggaa agctcgtgta acatggataa ccatcagtct
251 ctttcagtgc tccaaaaggc aacaaaaaca acttggagaa agaaagcaga
301 tcactcaaat gcaggaaaag attcgtatga gctaataaca tcagaaattc
351 aatttaaagg tgtctgctcg ctcacacata agatgattga ggaatctcac
401 aggttaagac gttcagttat ctgttatgac ttatcctgca atactacaca
451 ctgtaagcca acactatata tggttgtccc tgttcactcc tgtaatatga
501 tgaaaagttg tctaatagga cttggtccat atagaatcca ggtagtttat
551 gaaagaacat attgcactgt gggtgtcttg aatgaaggga aatgttttgt
601 acctgatcag agtgtagcca atattgtaaa aaatggtatt tttgacatcg
651 tgagtgttca aattatatgt ttttttataa gaattaaggg gtcaacctac
701 aagatattag aaacagttaa gactgcaatg aatggcaagt gcaatgggac
751 agatgataaa gtacaaggct attatatctg cttgctaggt gggaattcag
801 gtcctatata tgtaccatca ggaactgact ttagggccat ggaggctcta
851 gccaatatgc taagggctcc acatggagaa gaccatgacc tacctggaga
901 ggagcttgca tcttactcaa ttgcaggcac aattgaagga aagatccctc
951 atacagcaag ttcacaaaac ttagaattca ctgcgtattc aggtatacca
1001 agttattcat cattcagtgt ccacacgttg acccaggatg gacagctgag
1051 ctacagccct ggtttatttc ccaacctgaa tcaatctgat tgtaaaaaga
1101 atgcattacc tttaatatgg gaaggcacaa tagaactacc gggttattat
1151 gaagcaatac acccttgcaa tgtcttttgt gtcttttcag gccctggtgc
1201 atcatgtgag gcattctcag aaggagggat tttcaatatc acatcaccaa
1251 catgccttgt ttctaaacaa aatagatttc gagctgctga acaacaaata
1301 acatttgtat gccaacgggt tgacatggat attatcattt actgcaatgg
1351 acaaagaaag gtgattctta cgaaaactct tgttatcggt cagtgcattt
1401 attctattac aagtctattt tctttattgc catctgtggc ccattcgatt
1451 gcaattgaat tgtgtgtccc kggttttcat gggtgggcaa ctgcagcctt
1501 gcttacaact ttttgttttg gttggttgtt aataccttca ataacctata
1551 ttgtactcct tatcttgaaa tttattgcag caatcttcca taacaccacc
1601 caagaaaata agtttaaagc tatactaaga aaaataaagg aagagtttga
1651 aaaaactaaa ggttccatgg tttgtgacat ctgtaaatat gagtgcgaga
1701 ctgggaaaga attaaaagca cacaatcttt catgtaatca atctcaatgc
1751 ccttactgtt ttacccattg tgagatgaca gagagtgcat tccaagctca
1801 ttataaagtc tgtcaggcta ctcacaggtt tcgagaagac ttgaagaaaa
1851 ctataacccc ccaaactatc agccctggct gttataggac tttaaatcta
1901 ttccgatata agagcagatg ctatatccta acagtttggt tgtgcttgtt
1951 gattctggag tctattgcat gggcagctag tgcctctgag acttcattga
2001 accctctctg gactgacaat gctcatggag taggtagcgt tccaatgcat
2051 acagatctgg aacttgattt ctcattacca tcaagctcaa aatacacata
2101 taaaaggaaa ttgactagtc ccactaatcc tgaacaagct gtttcactcc
2151 atattgagat tgaaagtcaa ggaattgcag ccgatgtcca ctcactaggc
2201 cactggtatg atgctaggtt aaatttgaag acatcttttc attgttatgg
2251 tgcatgcaca aaataccagt acccttggca tactgccaag tgccactttg
2301 aacatgattt ccagtatgaa aatagttggg gctgcaatcc tcccgactgc
2351 cctggtgttg ggacaggctg tactgcctgt ggtctctatt tagatcagtt
2401 gaaacctgtt ggtagtgctt ataaattaat aacagtccgg tatagccgga
2451 aggtgtgtgt gcaatttgga gaggaaaact tgtgtaagac cattgacatg
2501 aatgattgct tcatgtctag gcatgtaaag gtttgcataa tagggactgt
2551 ttctaaattc tcacaagggg acacactggt gtttctaggg ccactggaag
2601 gcgggggact tatctttaag gattggtgca cgtctacctg ccaatatggt
2651 gatccaggag atatcatgag tcctagagac agaggtttta gttgtcctga
2701 gtttcctggt agttttagaa aaaaatgcaa ttttgcaaca acaccggtgt
2751 gtgagtactc aggtaatatg gtatctggtt ataaaaaagt catggccaca
2801 attgactcat ttcaatcatt taatacaagt ttaattcact ttacagaaga
2851 gaggattgaa tggaaggatc ctgacgggat gcttagggac cacctgaaca
2901 tactagtaac aaaggacatc gactttgaaa atcttgggga aaacccttgt
2951 aaagtagggc ttcaaacatc atctattgag ggtgcttggg gctctggggt
3001 tggatttaca ctggtatgtc aggtatctct tattgattgt gcacgatttt
3051 taacctccat caaggcatgt gacatggcta tctgctatgg tgcacagagc
3101 gtatctttag ttcggggtca aaatacagtc aaaatcacag gtaagggtgg
3151 gcacagtggt tcttccttta aatgttgtca tgaagtagac tgctcgagta
3201 caggtctgca agcaagtgca ccacacctgg acaaagtaaa cgggatttcg
3251 gagcaagaaa atgacaaggt ttatgatgat ggtgcaccac aatgtggggt
3301 aagttgttgg tttgtgaagt ccggagagtg gattagtgga atcctacatg
3351 gtaactgggt tgtggttgtt gtgcttgtta ttctactgtt attttcactt
3401 atacttttga gtatcctttg tcctgtaaga aaacataaga ggtcttaatc
3451 atatgagaga ctaatacctt atgctaacca ctgaaccaac acatataata
3501 cagtttaaat tttgttgttg tatatatttt gtctactcaa ccttttatta
3551 atttttttct attatattct aaaaaaaata gaatctttat tttctcacta
3601 tctatctctt tcattcgtgg gtgtttcttt aacctgcgga gcatactact
3651 a