Sequence of DPV Sangassou virus
Sangassou virus strain SA14 RNA polymerase (L) gene, complete cds.
ACC No: JQ082302
Dated: 2012-03-20 | Length: 6531 | CRC: 1549905335
ID JQ082302; SV 1; linear; viral cRNA; STD; VRL; 6531 BP.
XX
AC JQ082302;
XX
DT 05-FEB-2012 (Rel. 111, Created)
DT 20-MAR-2012 (Rel. 112, Last updated, Version 2)
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DE Sangassou virus strain SA14 RNA polymerase (L) gene, complete cds.
XX
KW .
XX
OS Sangassou virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Hantavirus;
OC unclassified Hantavirus.
XX
RN [1]
RP 1-6531
RX PUBMED; 22278233.
RA Klempa B., Witkowski P.T., Popugaeva E., Auste B., Koivogui L.,
RA Fichet-Calvet E., Strecker T., Ter Meulen J., Kruger D.H.;
RT "Sangassou virus, the first hantavirus isolate from Africa, displays
RT genetic and functional properties distinct from those of other
RT murinae-associated hantaviruses";
RL J. Virol. 86(7):3819-3827(2012).
XX
RN [2]
RP 1-6531
RA Klempa B., Witkowski P.T., Popugaeva E., Auste B., Koivogui L.,
RA Fichet-Calvet E., Ter Meulen J., Kruger D.H.;
RT ;
RL Submitted (28-NOV-2011) to the INSDC.
RL Institute of Virology, Helmut-Ruska-Haus, Charite Medical School,
RL Chariteplatz 1, Berlin 10117, Germany
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FH Key Location/Qualifiers
FH
FT source 1. .6531
FT /organism="Sangassou virus"
FT /segment="L"
FT /host="Hylomyscus simus"
FT /lab_host="Vero E6 cells"
FT /strain="SA14"
FT /mol_type="viral cRNA"
FT /country="Guinea"
FT /isolation_source="spleen"
FT /collection_date="2004"
FT /db_xref="taxon:358400"
FT gene 38. .6493
FT /gene="L"
FT CDS 38. .6493
FT /codon_start=1
FT /gene="L"
FT /product="RNA polymerase"
FT /note="RNA-dependent RNA polymerase"
FT /protein_id="AEZ02948.1"
FT /translation="MEKYREIHRILQAHHINSLTAVECIDYLDRLYAIRHDIVDQMIKH
FT DWSDNKDAEEPIGKVLLFAGIPNNIITALEKKIIPDHPSGKTLKAFFKMTPDNYKITGA
FT LIEFVEVTVTTDVDKGIREKKLKYESGLKYLEQELHTFFLKGEIQQPYKITLQVVSVRT
FT DGSNISTQWPSRRTDGVVQYMRLVQAEISYVREHLVKAEERAALEAMFNLKFNISSLKT
FT QPYFIPEYKGINLIAPKIDGLLQHTKEWLSKTHSFSFYEVKGSAVFDCFNSNEATHGTR
FT YPMSKQPRNFLLIQCSLISSYKPATILSDQVDSRRACNQFLSIIPETPVSSLIHDIAYK
FT YSNLTREDMLAFYSPRIHFNATQNVKEPGTFKLTATSLRPDSKAMLDILSKHNACEKKG
FT ALIESLNISSHITQSDCVSLVTKILSDLELNITETSIHESFTTKHTYVDNVLEKFFKNE
FT TQRYLIDVLKKTTAWHIGHMIRDITESLIAHSGLRRSKYWSLHAYNNGSVILFILPSKS
FT LEVAGSFVRFVTAFKMGPGLVDKDNLDSVIADQGCIWGISKVMSLDLNRLLALNIAFEK
FT ALVATATWFQYYTEDQGQFPLQHAVRSVFAYHFLLSVCQKMKICAIFDNLRYLIPAVTS
FT LYSGFPSLIEKLFERPFKSSLEVYIYYNIKSLLVALAQNNKARFYSKVKLLGLTVDQST
FT VGASGIYPSFLSRVVYKHYRSLISEVTTCFFLFEKGLHGNVNEEAKIHLETVEWAIKFR
FT KKEETYGEVLVEGGYTLDDLCQHPELVEQQLYCQEAVELAAAELNLILLTKSQVVANSM
FT LSKYWETPYFSQTRNISLKGMSGQVQEDGHLSSSVTIIEAIRYLSNSQQNPSVLKLYEE
FT TRKIKAQARIVRKFQRTEADRGFFITTLATRCRLEIIEDYYDAISKNVAEEYISYGGER
FT KILCIQSALEKALRWASGESFIDLSNGKFIRMKRKLMYVSADATKWSPGDNSAKFRRFT
FT AAVHNGLPDERLKNCVIDALRQIYKTDFFMSRKLRRYIDSMETLEPHVKEFCDFFPDGH
FT HGEVRGNWLQGNLNKCSSLFGVAMSLLFKRLWQELFPELDCFFEFAHHSDDALFIYGYL
FT EPVDDGTDWFLYVSQQIQAGKLYWYSVNTEMWKSMFNLHEHILLLGSIKISPKKTTLSP
FT TNAEFLSTFFEGCAVSIPFVKILLGSLSDLPGLGYFDDLAAAQSRCVKALDMGASPQIA
FT QLAVALCTSKVERLYGTALGMVNHPATYLQVKHEDTPIPLGGNGSMSIMELATAEIGMS
FT DKNLLKRALLGFMHKRQKQMVYILGLFKFLMNLSKDTFQHERLGEFSFMGKVQWKIFIP
FT KSEFEFSDMYTHKFLKIWSDQHATYDYIIPKGRDNLIIYLVRKINDPSIVTAMTMQSPL
FT QLRFRMQAKQHMKVCKLGEDWVTFREVLAAAHSFASTYEVSQIDLDLFQTLTDCTFSKE
FT YAWKDFLNSVHCDVIPTKQVQRAKVARTFTVREKDQIIQNSIPAVIGYKFAISIDEMSD
FT VLDVARFPDSLAVDLKTMKDGVYRELGLNISDPEVMKKVAPMLYKSAKSRVVIVQGNVE
FT GTAESICAYWLKTMSLVKTIRVKPHKEVLRAVSIFNRKEDIGQQKDLAALRLCIEIWRW
FT SKANNAPYKEWFHALWFEDKTFSEWLDRFIRVGVPPVDPEIQCAALMIADIKGDLSVLQ
FT LQANRRAYSGKQYDAYCVQTYNEVTKLYEGDLRVTFNFGLDCARLEIFWEKQTYILETS
FT ITQKHVLKIMMDEVTKELLRCGMRFKTEQVSGARHLVLYKTESGFEWGKPNIPCIVYKN
FT CALRTGLRTNHAINHKFMISIKDDGLRAIAQFDEESPRFLLAHAFHTIKDIRYQAVDAV
FT SNVWFYHKGVKLFLNPIISSGLFENFLKNLPAAIPPAAYSLIMNRAKISVDLFMFNDLL
FT RLINPNNVLDLSGLQPTEDGFSTVSSMSSRLWSEEVSFVDDDEEMEDEFTIDLQDVDFE
FT NIDMEADIEHFLQDESSYTGDLLIMSEETEVKKMRGIVKLLEPVKLIKSWVSKGLSIEK
FT VYSPVNIILMTRYLSKNFSFSDKQVSLLDPYDLTELESIVKGWGESVVDQFETLDKEAQ
FT HLVISKGICPEDVVPDSLFSFRHTIVLLRRLFPPDSVTTFY"
XX
SQ Sequence 6531 BP; 2049 A; 1086 C; 1398 G; 1998 T; 0 other;
jq082302 Length: 6531 20-MAR-2012 Type: N Check: 3251 ..
1 tagtagtaga ctccggaaga gacagtctac taaagaaatg gaaaaataca
51 gagagattca tagaatctta caggctcacc acataaactc attgactgca
101 gtggaatgta tcgattatct tgatcggctt tatgctatcc ggcatgacat
151 tgtagaccaa atgatcaagc atgactggtc agacaataag gatgctgaag
201 agccaatagg caaagtcttg ctttttgcag gtatacctaa caacataatt
251 actgctttag aaaagaaaat cataccagac cacccaagtg ggaagacact
301 taaggcgttc tttaaaatga ccccggataa ttataaaatc actggagccc
351 taattgagtt tgttgaggta actgtgacta cagatgtcga taaaggaatt
401 agggaaaaga agttaaagta tgaatcgggg ttgaagtatt tagaacaaga
451 acttcacacg tttttcttga agggtgaaat tcaacagcct tataaaatca
501 ctctccaagt agtctcagtg agaactgatg gttctaatat ctcaacacag
551 tggccaagta gaaggactga tggggtagtt caatacatga ggcttgtaca
601 ggcagaaatt agttatgtga gagaacatct tgtaaaggct gaagagaggg
651 cagcactaga agctatgttt aacttaaagt ttaatataag cagcttgaag
701 acacaacctt attttatccc tgagtataag gggattaatc ttattgcacc
751 aaaaattgat gggttacttc aacacacaaa agagtggtta tctaaaacac
801 attccttttc attttatgaa gttaaaggct cagctgtttt tgactgtttc
851 aactctaatg aggccacaca tgggactaga tacccaatgt caaagcagcc
901 cagaaatttt ttacttattc agtgttcttt gatctcatcc tataagccag
951 caacgatctt atctgaccaa gttgacagta gacgggcatg taatcagttt
1001 cttagtatta tacctgagac tcctgtctct tcattgattc atgatattgc
1051 ctataaatac agcaatttaa cacgggaaga tatgcttgct ttttattcac
1101 ccaggataca tttcaatgct acacaaaatg taaaagagcc aggtactttt
1151 aaattaacag ccaccagttt gaggccagac tccaaggcaa tgcttgatat
1201 attaagtaag cacaatgcct gtgagaagaa aggtgcatta attgaaagct
1251 tgaatataag cagccatatt acacaatcgg attgtgtcag tttggtgacc
1301 aaaattttat ctgacttgga gttaaacatt acagaaacat ctattcatga
1351 atcattcact acaaagcaca cttacgttga taatgtccta gaaaaattct
1401 ttaagaatga aacacaacga tatcttattg atgtgttaaa gaaaacaaca
1451 gcatggcaca tagggcatat gataagggac attactgaga gtttaattgc
1501 acattctgga ttaaggaggt ctaaatattg gtcattgcat gcatacaaca
1551 atggcagtgt gatattattc attctgccct ccaagtcttt agaggttgca
1601 gggtcatttg tgcggtttgt tactgctttt aagatgggtc ctggtttggt
1651 ggataaggat aatcttgact ccgttattgc tgatcagggt tgtatttggg
1701 gaatttctaa agtaatgagt ttagatttga accggctctt agcacttaat
1751 attgcatttg agaaggcact tgttgcaacc gcaacatggt ttcaatacta
1801 tacggaggac cagggacagt tccccttgca gcatgctgta agatctgtct
1851 ttgcatatca ttttctcctg tcagtgtgtc agaaaatgaa aatctgtgct
1901 atattcgata accttaggta cctgattcct gctgtgacat cgttgtattc
1951 aggtttccca tccttgatcg agaaactttt tgaacgaccc tttaagagct
2001 cattggaagt ttatatttac tataacatta aaagtctctt agttgcccta
2051 gcacaaaata ataaagctag attttactca aaagttaaac tgttgggttt
2101 gactgttgac caatctacag ttggggcaag tggtatttat ccatcattct
2151 tatcacgtgt ggtgtacaag cattatcgta gcttgatatc tgaggtaaca
2201 acttgctttt tcctatttga aaaaggcttg cacggtaatg tgaatgaaga
2251 ggctaaaatt catctcgaaa cagttgagtg ggccatcaaa ttcagaaaaa
2301 aggaggagac ttatggggaa gttcttgttg aaggtggtta cacacttgat
2351 gatctatgtc agcatcctga acttgttgag caacagctat attgccagga
2401 agctgtggaa ttagctgcag cagagcttaa tcttatttta ttaacaaagt
2451 ctcaagtcgt tgcaaacagc atgttatcaa aatactggga aacaccatac
2501 tttagccaga caagaaacat aagtctgaag gggatgtctg gacaagtgca
2551 ggaagatggc cacttatctt catctgtaac aatcattgaa gccatcagat
2601 acttgtctaa ctcacaacag aatccttctg tcctaaaatt atatgaggag
2651 actaggaaaa taaaagcgca agctcgcatt gtccgaaaat ttcagaggac
2701 tgaagctgat cgtggctttt ttatcacaac tctagctact cgttgccggt
2751 tagaaattat tgaagattat tatgatgcaa tctcaaagaa tgttgcagaa
2801 gagtatattt cttacggggg tgaacgcaaa attctatgta ttcaatctgc
2851 actagagaag gctcttaggt gggcatctgg agaaagtttc atagacttaa
2901 gtaatgggaa atttattaga atgaagagaa agctcatgta tgtcagtgct
2951 gatgcaacta agtggtcacc tggggacaac tctgcaaagt tcaggagatt
3001 cacagcagca gtgcataatg gcctccctga tgagaggttg aagaactgtg
3051 tgatagatgc actccgccag atttataaga ctgacttctt catgtcaaga
3101 aaattgaggc ggtatatcga ttctatggag actctggagc cccatgtaaa
3151 ggaattctgt gatttcttcc cggatggtca tcatggtgaa gttaggggta
3201 attggttgca aggtaactta aataaatgct cttccctttt tggtgttgcc
3251 atgtcattat tatttaagag attatggcag gaattgttcc cagaacttga
3301 ttgctttttt gaatttgctc atcattcaga tgatgctttg ttcatttacg
3351 gttatctaga gccagttgac gatgggacag attggtttct atatgtctca
3401 cagcaaatac aggcagggaa gttgtactgg tatagtgtga atacagagat
3451 gtggaaaagc atgtttaatc tccatgaaca tattctgttg ctaggctcta
3501 ttaagatttc accaaagaag acgacattat caccaacaaa tgcagagttc
3551 ttatcaacat tctttgaagg ttgtgctgtt tccataccat ttgttaagat
3601 attgctaggt tcactgtcag acttacctgg ccttggttat tttgatgact
3651 tggctgctgc acagagtaga tgtgtcaagg ctttagatat gggtgcttca
3701 cctcagatcg cacaacttgc tgtggcatta tgtacaagta aagtagaaag
3751 actttatggg acagctttag gaatggtcaa tcatccagca acatatcttc
3801 aagtaaagca tgaggatact cctataccct taggagggaa tgggtctatg
3851 tccattatgg agttagcaac cgcagaaata ggtatgtctg ataaaaacct
3901 tttaaagcgg gcacttctgg gtttcatgca caagcgtcaa aagcaaatgg
3951 tttatatact tggactattt aaattcttaa tgaatttatc aaaagatacg
4001 tttcaacatg agagacttgg agaattctca tttatgggaa aagttcagtg
4051 gaaaattttc atcccaaaat ctgaatttga gttttcagac atgtatactc
4101 ataagttttt gaaaatatgg agtgaccaac atgccacata cgattatatt
4151 attccgaaag ggcgtgataa tctaattatt taccttgtga gaaaaataaa
4201 tgacccaagt attgttacag ccatgacaat gcagtcccct ttacagctaa
4251 ggttcaggat gcaggcaaaa cagcatatga aagtctgtaa attaggtgaa
4301 gactgggtga cgtttaggga agtgcttgct gctgcacata gctttgcatc
4351 aacatatgag gttagtcaaa tagacctaga cttatttcag acattgacag
4401 attgtacttt ttcaaaggag tatgcttgga aggatttctt aaatagtgtt
4451 cattgtgatg tcatacctac aaagcaagtg caaagggcaa aagttgcaag
4501 aacattcact gtcagagaaa aggatcaaat tattcagaat agtatccctg
4551 cagtaatagg ttataagttt gcaatatcaa ttgatgaaat gtcagatgtc
4601 cttgatgtgg ctagattccc tgattcactg gctgttgatt taaagacaat
4651 gaaggatgga gtgtatagag agttaggctt aaatatatct gaccctgagg
4701 ttatgaagaa ggtggcacct atgttgtata agagtgcaaa atctagggtc
4751 gttatagttc aaggaaatgt agaaggcaca gcagaatcta tctgcgccta
4801 ctggctgaag actatgtcat tagttaagac aattagggtt aagcctcata
4851 aagaggtctt gcgagctgtt tcaattttca atagaaagga agatatcggt
4901 caacagaagg acttggctgc attaaggtta tgtattgaaa tttggagatg
4951 gtcaaaagct aataatgccc catataagga gtggttccat gctctgtggt
5001 ttgaggacaa aactttttca gagtggcttg atagattcat acgagttggt
5051 gtccctcctg ttgacccaga gatacaatgt gctgctttga tgattgcaga
5101 catcaaagga gatttatctg ttctacagct tcaggctaat aggagagcat
5151 attcaggaaa acaatacgat gcttactgtg tccaaacata caatgaggtc
5201 acaaagctgt atgaaggcga tttgcgagtg acctttaatt ttggattaga
5251 ctgtgctagg ttagagatat tttgggaaaa acagacctat attctggaga
5301 cctcaataac tcagaagcac gtgttaaaga ttatgatgga tgaagtaaca
5351 aaagaacttt tacgatgtgg tatgaggttt aagactgaac aagtatctgg
5401 tgctaggcat ctagtactgt ataagactga gtctggtttt gaatggggta
5451 aacctaatat cccttgtata gtctacaaga actgtgcgct aagaacaggc
5501 ttgagaacta atcatgcaat aaaccataag ttcatgatct ctataaagga
5551 tgatggtcta cgggccattg ctcagtttga tgaagaaagt ccacgtttcc
5601 ttttagcaca tgcttttcat acaatcaagg atataaggta tcaagctgtg
5651 gatgctgtta gtaatgtttg gttttatcac aagggggtta agttattttt
5701 aaatccaatt atatcatctg gtctatttga gaattttcta aaaaaccttc
5751 ctgcagcaat tccacctgca gcttattctc taatcatgaa tagggccaaa
5801 atttcagttg atttatttat gtttaatgac cttcttcgtc tcataaatcc
5851 aaacaatgta cttgatttgt caggtctcca gccaactgaa gatgggttta
5901 gtactgttag tagtatgtcg agtcgattat ggtctgaaga ggtcagtttt
5951 gttgatgatg atgaagaaat ggaagatgag tttacaatag atttgcaaga
6001 tgtggacttt gaaaatattg acatggaagc tgatatagaa cattttctgc
6051 aggatgaaag ctcatataca ggtgatctat taatcatgtc agaagaaact
6101 gaggtgaaga aaatgagagg tattgtaaaa ctcttagagc ctgtaaaatt
6151 gataaaaagt tgggtctcaa agggtttgtc aattgaaaag gtatacagcc
6201 cagtaaatat tatattgatg acaagatatc tttccaagaa ttttagtttt
6251 tctgacaagc aggtttcact attagaccca tatgatttga cagaattgga
6301 aagtatcgtt aagggttggg gtgagagtgt tgttgaccag tttgaaacac
6351 ttgataaaga ggctcagcac cttgttatct caaaggggat ttgcccagag
6401 gatgttgttc cagactcctt gttttctttt agacatacta ttgtcttgct
6451 aagaagatta tttcctcctg attctgtcac cactttttat taatgcttat
6501 tttctttttc attttccgga gcatactact a