Sequence of DPV Bean yellow mosaic virus

Bean yellow mosaic virus-[Canna] isolate CJ-1 polyprotein gene, partial cds.

ACC No: JQ178366

Dated: 2013-06-13 | Length: 1620 | CRC: 513492430

                
ID   JQ178366; SV 1; linear; genomic RNA; STD; VRL; 1620 BP.
XX
AC   JQ178366;
XX
DT   13-FEB-2012 (Rel. 111, Created)
DT   13-JUN-2013 (Rel. 117, Last updated, Version 2)
XX
DE   Bean yellow mosaic virus-[Canna] isolate CJ-1 polyprotein gene, partial
DE   cds.
XX
KW   .
XX
OS   Bean yellow mosaic virus-[Canna]
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus; Bean yellow mosaic virus.
XX
RN   [1]
RP   1-1620
RA   Kumari A., Kumar S., Raj S.K., Kaur C., Snehi S.K.;
RT   "Molecular identification of Bean yellow mosaic virus associated with
RT   mosaic disease on Canna species in India";
RL   Unpublished.
XX
RN   [2]
RP   1-1620
RA   Kumari A., Kumar S., Raj S.K., Kaur C., Snehi S.K.;
RT   ;
RL   Submitted (24-NOV-2011) to the INSDC.
RL   Plant Molecular Virology, CSIR-National Botanical Research Institute, Rana
RL   Pratap Marg, Lucknow, U. P. 226001, India
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1620
FT                   /organism="Bean yellow mosaic virus-[Canna]"
FT                   /host="canna sp."
FT                   /isolate="CJ-1"
FT                   /mol_type="genomic RNA"
FT                   /country="India"
FT                   /collected_by="Charanjeet Kaur"
FT                   /collection_date="Oct-2011"
FT                   /db_xref="taxon:1143716"
FT   CDS             <1. .1458
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:H6WCZ6"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:H6WCZ6"
FT                   /protein_id="AFA26482.1"
FT                   /translation="GNNSGQPSTVVENTLLVFRAFSYPEKNLSIKGALEDPFVFFAKGN
FT                   DLLIPLNPKGDSFLNDLGSLFRELGLKYNLTKKTGHKGNLGFMSHKGGKIKGRGIPNRE
FT                   KNRFVSLLKWEKPFHPKHSLEVFWAVIIKAGGYPFRLRHIGHFYLGGLNQPPNNQLRAE
FT                   GKPPYFSEVALNPLYTEERVTPPKLEGYTFASLVCFNPEGEETLACPFQAPQETLMEGD
FT                   EKKNRDKKTENNPPKDSKGQSSRLVVPDRDVNAGTVGTFSVPRLKKISGKLNIPKIGGK
FT                   MVLNLDHLLGYNPPQDDISNTIATQAQFEAWYNGVKNAYRVEDSQMGIILNGLIVWCIE
FT                   NGTSGDLQGEWTMMDGKEQVAYPLKPILDNAKPTFRQIMAHFSQVAEAYIEKRNATERY
FT                   MPRYGLQRNLTDYGLARYAFDFYRLTSGTPVRAREAHMQMKAAAIRGKSNRLFGLDGNV
FT                   GTDEENTERHTAGDVNRDMHTMLGVCI"
XX
SQ   Sequence 1620 BP; 505 A; 310 C; 388 G; 417 T; 0 other;

jq178366 Length: 1620  13-JUN-2013  Type: N  Check: 3352  ..

       1  gggaataata gtgggcagcc atcaacagtt gttgaaaaca cactattggt
      51  cttcagggca ttttcctacc cggaaaaaaa cctcagtatc aagggggctc
     101  tcgaggaccc ttttgttttc tttgctaagg gaaatgattt gctaataccc
     151  ttaaacccaa aaggggattc ctttcttaat gatttgggaa gtctgtttag
     201  ggagctgggt ttaaagtata atttaaccaa aaaaacaggg cacaagggga
     251  atttggggtt tatgtcacat aaggggggaa aaataaaggg aaggggaatc
     301  ccaaaccggg aaaaaaaccg ttttgtctca ttattaaaat gggaaaaacc
     351  attccaccca aaacacagct tggaggtttt ttgggcggtt ataataaaag
     401  cggggggtta tccatttcgg ctgaggcaca tagggcattt ttacctcggg
     451  gggttaaacc aacccccgaa caaccaatta agggctgagg gaaaaccccc
     501  ttacttttca gaggtggcac tcaacccctt gtacacggag gaaagggtta
     551  ccccacccaa actcgaaggg tatacctttg cttcacttgt ttgttttaac
     601  ccagagggtg aggaaaccct tgcgtgccct ttccaagctc cccaggaaac
     651  tctcatggaa ggtgatgaaa agaagaacag ggataagaaa actgagaaca
     701  accctcctaa ggactctaaa ggacagagta gcagattagt tgtgcctgat
     751  agagatgtga atgcagggac tgttggtact ttctcagttc ctagactcaa
     801  aaagatatca ggaaagttaa acattcccaa gattggtggg aaaatggttc
     851  tcaatctgga tcacttgctt ggatacaacc caccgcagga tgatatttca
     901  aacactatag caacacaggc acaatttgaa gcgtggtaca atggtgtgaa
     951  aaatgcatat agagttgagg attcacaaat gggtataatt ttgaacggtc
    1001  ttatagtgtg gtgcatagaa aatggaacat caggagacct acagggtgaa
    1051  tggacgatga tggatggtaa agaacaggtt gcatatcctc taaaaccaat
    1101  tcttgacaat gcaaagccaa ctttccgcca aataatggca catttttcac
    1151  aagttgcaga agcttatata gagaaaagga atgcgacaga gaggtacatg
    1201  ccacggtatg gacttcagag aaatttgact gactacggtt tggctagata
    1251  cgcttttgat ttctaccgac tgacttcggg aactcctgtg cgtgctagag
    1301  aggcacacat gcaaatgaag gcagcagcaa ttagaggtaa atcaaaccga
    1351  ttatttggac ttgacggcaa tgttggaaca gacgaggaga acacagagag
    1401  acacaccgca ggagatgtca atcgtgatat gcacaccatg cttggtgttt
    1451  gtatttagag tatccgtcta taaattctct ataatttggc gttacattac
    1501  ttaatactat gcattagtga ggtttcacct ccagcatttt aaattcagta
    1551  tgtgtatcat tctctctact ctgacagggt aagcagtcag tgaggttgcc
    1601  tcgtgtgagc ttgatctttg