Sequence of DPV Blueberry red ringspot virus

Blueberry red ringspot virus isolate PDR-C movement protein gene, complete cds.

ACC No: JQ236642

Dated: 2012-03-26 | Length: 1098 | CRC: 2108962973

                
ID   JQ236642; SV 1; linear; genomic DNA; STD; VRL; 1098 BP.
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AC   JQ236642;
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DT   26-MAR-2012 (Rel. 112, Created)
DT   26-MAR-2012 (Rel. 112, Last updated, Version 1)
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DE   Blueberry red ringspot virus isolate PDR-C movement protein gene, complete
DE   cds.
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KW   .
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OS   Blueberry red ringspot virus
OC   Viruses; Retro-transcribing viruses; Caulimoviridae; Soymovirus.
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RN   [1]
RP   1-1098
RA   Kalinowska E., Paduch-Cichal E., Chodorska M.;
RT   "Genetic diversity in movement protein coding region among Blueberry red
RT   ringspot virus (BRRSV) isolates";
RL   Unpublished.
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RN   [2]
RP   1-1098
RA   Kalinowska E., Paduch-Cichal E., Chodorska M.;
RT   ;
RL   Submitted (04-DEC-2011) to the INSDC.
RL   Department of Plant Pathology, Warsaw University of Life Sciences
RL   WULS-SGGW, Nowoursynowska 166, Warsaw 02-787, Poland
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1098
FT                   /organism="Blueberry red ringspot virus"
FT                   /host="Vaccinium corymbosum cultivar Darrow"
FT                   /isolate="PDR-C"
FT                   /mol_type="genomic DNA"
FT                   /country="Poland"
FT                   /collection_date="2011"
FT                   /db_xref="taxon:172220"
FT   CDS             1. .1098
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /note="ORF I"
FT                   /protein_id="AFE82818.1"
FT                   /translation="MSSPIILDQAGVIQNQEQNQISTVNNQNQMSRVEDQNQSEEIRHI
FT                   NQIFDIIQSNETNDYYGVDVQLERSKLKQIAKEGKLTLKSGQGIKSEGFLPSITRKNIL
FT                   YLGKFTSEQPLEISTAVGQEALSLVNGKQIADRIAKMKQSDKEKIQYIHLSTIQILVKS
FT                   TYASIDTPMDIIVIDNRITSKNKKEQVLGIIKGNLKYGVIKFDVSLHFAIPLVTKNLSQ
FT                   SIGILYKFHRQDLMEKGDYPLSITYSVGYALSNSHHSVDYIDQEIIHIDDLFKNTSTKL
FT                   VTFEKKNENANDIFRAPPVRMIKPREDISKPTITDVTDPLKPTTSSSIQLAPPPNLHRK
FT                   PESMQNLEKQIQELRRTVTNLNEKI"
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SQ   Sequence 1098 BP; 482 A; 181 C; 166 G; 269 T; 0 other;

jq236642 Length: 1098  26-MAR-2012  Type: N  Check: 1553  ..

       1  atgtcgtcac ctatcatact agatcaagca ggagtaatcc aaaatcaaga
      51  acagaatcaa atatcaacag tcaacaatca aaatcaaatg tctagagtcg
     101  aagatcaaaa tcaatcagaa gaaatcagac atatcaatca aatctttgat
     151  attatccaat caaatgaaac aaatgattat tatggagttg atgtccaatt
     201  agaaagatct aaactaaaac aaatagcaaa agaaggaaaa ttaacattaa
     251  aatctggaca aggaataaaa tcagaaggat ttttaccatc tatcactaga
     301  aagaatatat tatatttagg aaagttcacc agcgagcaac cattagaaat
     351  tagtacagca gtaggacaag aagccttatc attagttaat ggaaagcaaa
     401  tagcagaccg aatagcaaag atgaaacaat cagataaaga aaagattcag
     451  tatatacact tgagtacgat acagatatta gttaaatcta cctatgcctc
     501  aatagataca cccatggata ttatagttat tgataataga ataacttcta
     551  agaataagaa agaacaagtt ctaggaataa ttaaaggaaa tctgaaatat
     601  ggagttatta agtttgacgt aagtttacac ttcgccatac cattagtcac
     651  caagaattta agtcaatcta taggaatatt atataaattt catagacaag
     701  atctgatgga aaaaggagat tatccactta gtatcaccta ctctgtagga
     751  tatgcattaa gcaatagtca ccatagtgtt gattatatag atcaagagat
     801  tatacatata gatgacctat ttaagaatac cagtactaag ctagtaacat
     851  tcgaaaagaa aaatgaaaac gctaacgata tatttagagc accaccagtt
     901  agaatgatta agcctagaga ggatatatca aaaccaacaa taacagatgt
     951  cactgaccca ttaaaaccaa ctaccagtag ttctatccaa ctagcaccgc
    1001  cacctaacct acatagaaaa ccagaaagta tgcagaacct agaaaagcaa
    1051  atacaagaac taagaaggac cgttaccaac ctcaatgaaa aaatatga