Sequence of DPV Blueberry red ringspot virus

Blueberry red ringspot virus isolate PDR-E movement protein gene, complete cds.

ACC No: JQ236643

Dated: 2012-03-26 | Length: 1098 | CRC: 2097353455

                
ID   JQ236643; SV 1; linear; genomic DNA; STD; VRL; 1098 BP.
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AC   JQ236643;
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DT   26-MAR-2012 (Rel. 112, Created)
DT   26-MAR-2012 (Rel. 112, Last updated, Version 1)
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DE   Blueberry red ringspot virus isolate PDR-E movement protein gene, complete
DE   cds.
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KW   .
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OS   Blueberry red ringspot virus
OC   Viruses; Retro-transcribing viruses; Caulimoviridae; Soymovirus.
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RN   [1]
RP   1-1098
RA   Kalinowska E., Paduch-Cichal E., Chodorska M.;
RT   "Genetic diversity in movement protein coding region among Blueberry red
RT   ringspot virus (BRRSV) isolates";
RL   Unpublished.
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RN   [2]
RP   1-1098
RA   Kalinowska E., Paduch-Cichal E., Chodorska M.;
RT   ;
RL   Submitted (04-DEC-2011) to the INSDC.
RL   Department of Plant Pathology, Warsaw University of Life Sciences
RL   WULS-SGGW, Nowoursynowska 166, Warsaw 02-787, Poland
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1098
FT                   /organism="Blueberry red ringspot virus"
FT                   /host="Vaccinium corymbosum cultivar Darrow"
FT                   /isolate="PDR-E"
FT                   /mol_type="genomic DNA"
FT                   /country="Poland"
FT                   /collection_date="2011"
FT                   /db_xref="taxon:172220"
FT   CDS             1. .1098
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /note="ORF I"
FT                   /protein_id="AFE82819.1"
FT                   /translation="MSSPIILDQAGIIQNQEQNQISTVNNQNQMSRIEDQNQSEEIRHI
FT                   NQIFDIIQSNETNDYYGVDVQLERSKLKQIAKEGKLTLKSGQGIKSEGFLPSITRKNIL
FT                   YLGKFTSEQPLEISTAVGQEALSLVNGKQIADRIAKMKQSDKEKIQYIHLSTIQILVKS
FT                   TYASIDTPMDIIVIDNRIISKNKKEQVLGIIKGNLKYGVIKFDVSLHFAIPLVTKNLSQ
FT                   SIGILYKFHRQDLMEKGDYPLSITYSVGYALSNSHHSVDYIDQEIIHIDDLFKNTSTKL
FT                   VTFEKKNENANDIFKAPPVRMIKPREDISKPTITDVTDPLKPTTSSSIQLAPPPNLHRK
FT                   PESMQNLEKQIQELRRTVTNLNEKI"
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SQ   Sequence 1098 BP; 494 A; 176 C; 161 G; 267 T; 0 other;

jq236643 Length: 1098  26-MAR-2012  Type: N  Check: 371  ..

       1  atgtcatcac ctatcatatt agatcaagca ggaataatcc aaaatcaaga
      51  acaaaatcaa atatcaacag tcaataatca aaatcagatg tcgagaatag
     101  aagatcaaaa tcaatcagaa gaaatcagac atatcaatca aatctttgat
     151  attatccaat caaatgaaac aaatgattat tatggagttg atgtccaatt
     201  agaaagatct aaactaaaac aaatagcaaa agaaggaaaa ttaacattaa
     251  aatctggaca aggaataaaa tcagaaggat ttttaccatc tatcactaga
     301  aagaatatat tatatttagg aaagttcacc agcgagcaac cattagaaat
     351  tagtacagca gtaggacaag aagccttatc attagttaat ggaaagcaaa
     401  tagcagacag aatagcaaag atgaaacaat cagataaaga aaaaattcag
     451  tatatacact tgagcacaat acagatatta gttaaatcta cctatgcctc
     501  aatagataca cccatggata ttatagttat tgataataga attatttcta
     551  aaaataagaa agaacaagtt ctaggaataa ttaaaggaaa tctgaaatat
     601  ggagttatta agtttgatgt aagtttacac ttcgccatac cattagtaac
     651  taagaactta agtcaatcta taggaatatt atataagttc cacagacagg
     701  atctaatgga aaaaggagac tacccactta gtatcaccta ttcagtagga
     751  tatgcattaa gcaatagtca ccatagtgtt gattatatag atcaagagat
     801  tatacatata gatgacctat ttaaaaatac cagtactaag ctagtaacat
     851  tcgaaaagaa gaatgagaac gctaacgata tatttaaagc accaccagta
     901  agaatgatta agcctagaga agatatatca aaaccaacaa taacagatgt
     951  cactgaccca ttgaaaccaa ccaccagtag ttctatccaa ctagcacctc
    1001  cacctaacct acatagaaaa ccagaaagta tgcagaacct agaaaagcaa
    1051  atacaagaat taagaaggac agtaacaaac ctcaatgaaa aaatatga