Sequence of DPV Turnip mosaic virus

Turnip mosaic virus isolate IND4 coat protein gene, partial cds.

ACC No: JQ246077

Dated: 2012-03-26 | Length: 867 | CRC: 1790355233

                
ID   JQ246077; SV 1; linear; genomic RNA; STD; VRL; 867 BP.
XX
AC   JQ246077;
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DT   26-MAR-2012 (Rel. 112, Created)
DT   26-MAR-2012 (Rel. 112, Last updated, Version 1)
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DE   Turnip mosaic virus isolate IND4 coat protein gene, partial cds.
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KW   .
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OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-867
RA   Parmar N., Bhardwaj S.V., Thakur P.D., Handa A.;
RT   "Molecular characterization of Turnip mosaic potyvirus (TuMV) infecting
RT   radish (Raphanus sativus L.)";
RL   Unpublished.
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RN   [2]
RP   1-867
RA   Parmar N., Bhardwaj S.V., Thakur P.D., Handa A.;
RT   ;
RL   Submitted (06-DEC-2011) to the INSDC.
RL   Biotechnology, Dr Y S Parmar University of Horticulture and Forestry,
RL   Nauni, Solan, Himachal Pradesh 173 230, India
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FH   Key             Location/Qualifiers
FH
FT   source          1. .867
FT                   /organism="Turnip mosaic virus"
FT                   /host="Raphanus sativus L."
FT                   /isolate="IND4"
FT                   /mol_type="genomic RNA"
FT                   /country="India:Mandi, Himachal Pradesh"
FT                   /collected_by="Nehanjali Parmar"
FT                   /collection_date="2010"
FT                   /identified_by="Nehanjali Parmar"
FT                   /db_xref="taxon:12230"
FT   CDS             <1. .867
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="AFE55684.1"
FT                   /translation="AGETLDAGLTEEQKQAEKEKKERERSEKERERQRQLALKKGKNAA
FT                   QEEGERDNEVNAGTFGTFSVPRLKSLTSKMRVPKYEKRVALNLDHLILYTPEQTDLSNT
FT                   RSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVWCIENGTSPNVNGMWVMMDGDDQVE
FT                   FPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFD
FT                   FYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTVENTERHTTEDVNRNMHN
FT                   LLGVKGL"
XX
SQ   Sequence 867 BP; 287 A; 176 C; 228 G; 176 T; 0 other;

jq246077 Length: 867  26-MAR-2012  Type: N  Check: 4620  ..

       1  gcaggtgaga cgcttgatgc cggcttaaca gaagagcaga agcaggctga
      51  gaaggagaaa aaggagagag agagatcaga gaaagagcga gaaaggcaaa
     101  gacagctagc gcttaagaaa ggcaaaaacg cagcacaaga agagggcgaa
     151  cgtgacaatg aagtaaacgc cggaactttc ggaactttca gcgtgcctag
     201  acttaaaagt cttacaagca aaatgcgtgt gccgaagtat gagaaaagag
     251  ttgccctcaa cctcgatcat ttgatcttat acacgccgga gcagacagat
     301  ttatcaaaca cgcgttcaac gcggaagcag tttgacactt ggtttgaagg
     351  tgtcatggct gactatgagt taacggagga taaaatgcaa ataattctca
     401  atggtttaat ggtctggtgc attgagaatg gaacctcccc aaacgtaaac
     451  ggaatgtggg tgatgatgga cggagatgat caggtggaat tcccgatcaa
     501  gccgctcatt gaccacgcca aacccacatt taggcaaata atggcccatt
     551  tcagtgacgt agctgaagcg tacattgaaa agcgtaacca ggaccgacca
     601  tacatgccac gatatggtct tcagcgcaat ttaaccgaca tgagcttagc
     651  tcgttacgca tttgatttct acgaaatgac ttctagaact ccaatacgtg
     701  cgagagaggc acacatccag atgaaagcag cagcactgcg tggcgcaaat
     751  aataatttgt tcggcttgga tggtaacgtc ggcacaacgg tagagaacac
     801  ggaaaggcat acgaccgaag acgttaatcg gaacatgcat aacttacttg
     851  gcgttaaggg gttatga