Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate PMaLV 2 coat protein gene, partial cds.

ACC No: JQ318029

Dated: 2013-01-01 | Length: 867 | CRC: -567038365

                
ID   JQ318029; SV 1; linear; genomic RNA; STD; VRL; 867 BP.
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AC   JQ318029;
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DT   01-JAN-2013 (Rel. 115, Created)
DT   01-JAN-2013 (Rel. 115, Last updated, Version 1)
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DE   Papaya ringspot virus isolate PMaLV 2 coat protein gene, partial cds.
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KW   .
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OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-867
RA   Zhang J.;
RT   "Cloning and Sequence Comparison of the Coat Protein Gene of a Novel Papaya
RT   Ringspot Virus";
RL   Unpublished.
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RN   [2]
RP   1-867
RA   Zhang J.;
RT   ;
RL   Submitted (24-DEC-2011) to the INSDC.
RL   Institute of Tropical Bioscience and Biotechnology, Chinese Academy of
RL   Tropical Bioscience and Biotechnology, Xueyuan Road 4, Haikou, Hainan
RL   571101, China
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CC   ##Assembly-Data-START##
CC   Assembly Method       :: MacVector v. 2010
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1. .867
FT                   /organism="Papaya ringspot virus"
FT                   /host="papaya"
FT                   /isolate="PMaLV 2"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collection_date="01-Oct-2011"
FT                   /db_xref="taxon:12205"
FT   CDS             <1. .>867
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="AFU64559.1"
FT                   /translation="SKNEAVDAGLNEKLKEKEKQREKEKEKDKQKEKDNGGASDGNDVS
FT                   TSTKTGERDRDVNAGTSGTFTVPRIKSFTDKMILPRIKGRSVLNLNHLLQYNPQQIDIS
FT                   NTRATQSQFEKWYEGVRNDYGLSDNEMQVMLNGLMVWCIENGTSPDISGVWVMMDGETQ
FT                   VDYPIKPLIEHANPSFRQIMAHFSNAAEAYIAKRNATERYMPRYGIKRNLTDISLARYA
FT                   FDFYEVNSKTPDRAREAHIQMKAAALRNTSRRMFGMDGSVSNKEENTERHTVDDVNRDM
FT                   HSLLGMRN"
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SQ   Sequence 867 BP; 309 A; 145 C; 207 G; 206 T; 0 other;

jq318029 Length: 867  01-JAN-2013  Type: N  Check: 5778  ..

       1  tccaaaaatg aagctgtgga tgctggtctg aatgaaaagc taaaagaaaa
      51  agaaaaacag agagagaaag aaaaagaaaa agataaacaa aaagagaaag
     101  ataatggtgg agctagtgac ggaaacgatg tgtcaactag cacaaaaact
     151  ggagagagag atagagatgt caacgccgga actagtggaa ctttcactgt
     201  tccaaggata aagtctttta ctgataagat gattttacca agaattaagg
     251  gaaggtctgt ccttaattta aatcatcttc ttcagtataa tccgcaacaa
     301  attgacatct caaacactcg tgccactcaa tctcaatttg aaaagtggta
     351  tgagggagtg aggaatgatt atggtcttag tgataacgaa atgcaagtga
     401  tgttaaatgg tttaatggtt tggtgtatcg aaaatggtac atccccagac
     451  atatctggtg tttgggtaat gatggatggg gaaacccagg ttgattatcc
     501  catcaaacct ttaattgaac atgcaaatcc ttcattcagg caaattatgg
     551  ctcacttcag taacgcggca gaagcatata tcgcaaagag aaatgcaact
     601  gagaggtaca tgccgcggta tggaattaaa aggaatttga ctgacattag
     651  cctcgctcga tatgctttcg atttctatga ggtgaattcg aaaacacctg
     701  atagggctcg tgaagctcat atacagatga aggcagcagc gctacgtaac
     751  actagtcgca gaatgttcgg aatggacggc agtgtcagta acaaggaaga
     801  aaacacggag agacacacag tggatgatgt caacagagac atgcactctc
     851  tcctgggtat gcgcaat