Sequence of DPV Soybean mosaic virus

Soybean mosaic virus isolate M2.1-1 capsid protein gene, partial cds.

ACC No: JQ361549

Dated: 2013-01-31 | Length: 798 | CRC: 722047664

                
ID   JQ361549; SV 1; linear; genomic RNA; STD; VRL; 798 BP.
XX
AC   JQ361549;
XX
DT   31-JAN-2013 (Rel. 115, Created)
DT   31-JAN-2013 (Rel. 115, Last updated, Version 1)
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DE   Soybean mosaic virus isolate M2.1-1 capsid protein gene, partial cds.
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KW   .
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OS   Soybean mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-798
RA   Oliveros O.A., Gordillo L.A.;
RT   "Incidence and diversity of Soybean Mosaic virus on Passiflora edulis
RT   Sims";
RL   Unpublished.
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RN   [2]
RP   1-798
RA   Oliveros O.A., Gordillo L.A.;
RT   ;
RL   Submitted (04-JAN-2012) to the INSDC.
RL   Agronomy, Universidad Nacional de Colombia, AV 45 No 26-85, Bogota 0000,
RL   Colombia
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CC   ##Assembly-Data-START##
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1. .798
FT                   /organism="Soybean mosaic virus"
FT                   /host="Passiflora edulis"
FT                   /isolate="M2.1-1"
FT                   /mol_type="genomic RNA"
FT                   /country="Colombia"
FT                   /collection_date="01-Nov-2011"
FT                   /db_xref="taxon:12222"
FT   CDS             <1. .798
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /protein_id="AFV80156.1"
FT                   /translation="SGKDKEEDVDAGKESKKSTSSSKGAGTSSKDVNVGSKGRVVPRLQ
FT                   KITGKMNLPMVGGKIILSLDHLLEYKPNQVNLFNTRATKTQFEVWYSAVKDEYELDDEQ
FT                   MGVVMNGFMVWCIDNGTSPDANGVWVMMDEKEQIEYPLKPIVENAKPTLRQIMHHFSDA
FT                   AEAYIEMRNSESLYMPRYGLLRNLRDRELARYAFDFYEVTSKTPNRAREAIAQMKAAAL
FT                   SGVNNKLFGLDGNISTNSENTERHTARDVNQNMHTLLGMGPPQ"
XX
SQ   Sequence 798 BP; 264 A; 138 C; 210 G; 186 T; 0 other;

jq361549 Length: 798  31-JAN-2013  Type: N  Check: 7527  ..

       1  tcaggcaagg acaaggaaga agatgtggat gcaggtaagg agtcaaagaa
      51  gagcaccagt agtagtaagg gagctggcac aagcagcaaa gatgtaaatg
     101  ttggatcaaa gggaagggtg gttccacgtt tgcagaagat tacagggaag
     151  atgaatcttc caatggttgg agggaagatc attctcagtt tggaccactt
     201  gcttgagtac aaacctaatc aggtcaattt attcaacact cgagcaacaa
     251  aaacacagtt tgaagtgtgg tacagtgcag ttaaagatga atatgagctt
     301  gacgatgagc agatgggtgt ggttatgaat ggtttcatgg tatggtgcat
     351  tgacaacggc acatctccag atgctaatgg cgtgtgggtg atgatggatg
     401  aaaaggaaca gattgaatat ccgctgaaac ccattgtcga aaatgcaaaa
     451  ccaactttga gacaaattat gcaccatttc tcagatgcag cagaagctta
     501  cattgagatg agaaattctg aaagtctgta tatgcctaga tatggactac
     551  tgaggaattt gagagataga gagctagctc gctatgcttt tgacttctat
     601  gaggttactt ctaaaacacc aaacagggca agggaagcaa tagcgcagat
     651  gaaggctgca gctctctcgg gagttaacaa caagttgttt ggacttgatg
     701  ggaacatctc aaccaactcc gaaaatactg aaaggcacac tgcaagggat
     751  gtgaatcaaa acatgcacac tcttttgggc atgggcccac cgcagtaa