Sequence of DPV Turnip mosaic virus

Turnip mosaic virus isolate TuMV-HZ coat protein mRNA, partial cds.

ACC No: JQ388886

Dated: 2012-03-16 | Length: 864 | CRC: -36270194

                
ID   JQ388886; SV 1; linear; mRNA; STD; VRL; 864 BP.
XX
AC   JQ388886;
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DT   16-MAR-2012 (Rel. 112, Created)
DT   16-MAR-2012 (Rel. 112, Last updated, Version 1)
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DE   Turnip mosaic virus isolate TuMV-HZ coat protein mRNA, partial cds.
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KW   .
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OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-864
RA   Pan X.P., Shi M.L.;
RT   "The Sequence Analysis of CP Gene of TuMV-HZ Isolate";
RL   Unpublished.
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RN   [2]
RP   1-864
RA   Pan X.P., Shi M.L.;
RT   ;
RL   Submitted (08-JAN-2012) to the INSDC.
RL   College of Life and Environmental Sciences, Hangzhou Normal University, 16
RL   Xuelin Str., Xiasha High Education Zone, Hangzhou, Zhejiang 310036, P.R.
RL   China
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FH   Key             Location/Qualifiers
FH
FT   source          1. .864
FT                   /organism="Turnip mosaic virus"
FT                   /host="Brassica juncea var.tumida"
FT                   /isolate="TuMV-HZ"
FT                   /mol_type="mRNA"
FT                   /country="China"
FT                   /collection_date="05-Apr-2011"
FT                   /PCR_primers="fwd_name: cp-bamhi, fwd_seq:
FT                   cgggatccgcaggtgaaacgct, rev_name: cp-xhoi, rev_seq:
FT                   gcgagctcttataaccccttaacgc"
FT                   /db_xref="taxon:12230"
FT   CDS             <1. .>864
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="AFD50186.1"
FT                   /translation="AGETLDAGLTDEQKQAEKEKKEREKAEKERERQKQLALKKGKNVA
FT                   QEEGERDKEVNAGTSGTFSVPRLKSLTSKMRVPRYEQRVALNLDHLILYTPEQTDLSNT
FT                   RSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVWCIENGTSPNINGMWVMMDGDDQVE
FT                   FPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFD
FT                   FYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTVENTERHTTEDVNRNMHN
FT                   LLGVKGL"
XX
SQ   Sequence 864 BP; 287 A; 181 C; 232 G; 164 T; 0 other;

jq388886 Length: 864  16-MAR-2012  Type: N  Check: 5179  ..

       1  gcaggtgaaa cgcttgatgc aggtttgaca gacgagcaaa agcaggcgga
      51  gaaggagaag aaggagagag agaaggcaga aaaggaacga gagagacaga
     101  aacagttggc actcaagaaa ggcaagaatg ttgcacaaga agagggagaa
     151  cgcgacaagg aagtgaacgc tggaacctct ggaactttca gtgtacccag
     201  acttaagagt ctgacaagca agatgcgcgt gccaagatat gagcaaagag
     251  tggcactaaa cctcgatcat ctaatcctat acacgccaga gcagacggat
     301  ctatctaaca cacgttcaac gcgaaagcag ttcgacacat ggtttgaagg
     351  tgtaatggct gattacgaac tgacggagga caaaatgcaa atcattctca
     401  atggtttaat ggtctggtgc attgagaacg gaacctcccc gaacataaac
     451  ggaatgtggg tgatgatgga cggcgatgat caggtggaat tcccgatcaa
     501  accgctcatt gaccacgcca aacccacatt taggcagata atggcccatt
     551  tcagtgacgt agctgaagcg tacattgaaa agcgtaacca agaccgacca
     601  tacatgccac gatatggtct tcagcgcaat ttaaccgaca tgagcttagc
     651  tcgctacgcg tttgacttct atgaaatgac ttctaggact ccaatacgtg
     701  cgagagaagc acacatccag atgaaagcag cagcactgcg tggcgcaaat
     751  aacaatttgt tcggcttgga tggaaacgtt ggtacaacgg tagagaacac
     801  ggagaggcat acgaccgagg acgttaatcg gaacatgcat aacttacttg
     851  gcgttaaggg gtta