Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate PRSV-CP-BD-C17 coat protein gene, partial cds.

ACC No: JQ394689

Dated: 2012-04-25 | Length: 846 | CRC: 2023039280

                
ID   JQ394689; SV 1; linear; genomic RNA; STD; VRL; 846 BP.
XX
AC   JQ394689;
XX
DT   25-APR-2012 (Rel. 112, Created)
DT   25-APR-2012 (Rel. 112, Last updated, Version 1)
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DE   Papaya ringspot virus isolate PRSV-CP-BD-C17 coat protein gene, partial
DE   cds.
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-846
RA   Akhter M.S., Jain R.K., Reetika K., Basavaraj Y.B., Phaneendra C.;
RT   "Studies on genetic diversity of PRSV-P populations from Bangladesh based
RT   on coat protein";
RL   Unpublished.
XX
RN   [2]
RP   1-846
RA   Akhter M.S., Jain R.K., Reetika K., Basavaraj Y.B., Phaneendra C.;
RT   ;
RL   Submitted (10-JAN-2012) to the INSDC.
RL   Division of Plant Pathology, Advanced Centre for Plant Virology, Indian
RL   Agricultural Research Institute, Pusa Campus, New Delhi, Delhi 110012,
RL   India
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FH   Key             Location/Qualifiers
FH
FT   source          1. .846
FT                   /organism="Papaya ringspot virus"
FT                   /host="Carica papaya"
FT                   /isolate="PRSV-CP-BD-C17"
FT                   /mol_type="genomic RNA"
FT                   /country="Bangladesh:Chapai Nawabgong, Bangladesh"
FT                   /isolation_source="leaf"
FT                   /collected_by="Md.Shamim Akhter"
FT                   /collection_date="10-Dec-2010"
FT                   /db_xref="taxon:12205"
FT   CDS             <1. .>846
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /protein_id="AFI25153.1"
FT                   /translation="SKAEAVDAGLNDKLKEKEQREKEKRKEKDEAGGGNDVSTSTKTGE
FT                   RDRDVNAGTSGTFTVPRIKLFNDKMVLPRVKGKTVLNLNHLLQYSPQQIDISNTRATQS
FT                   QFERWYEGVKNDYGLNDNEMQVMLNGLMVWCIENGTSPDISGVWVMMDGDTQVDYPIKP
FT                   LIEHATPSFRQIMAHFSNAAEAYIAKRNATEKYMPRYGIKRNLTDTSLARYAFDFYEVN
FT                   SKTPDRAREAHMQMKAAALRNSNRRLFGIDGSVSSKEENTERHTVEDVNRDMHSLLGMR
FT                   N"
XX
SQ   Sequence 846 BP; 290 A; 149 C; 209 G; 198 T; 0 other;

jq394689 Length: 846  25-APR-2012  Type: N  Check: 533  ..

       1  tcgaaggctg aggctgttga tgcgggatta aacgataagc tcaaagagaa
      51  agaacaaaga gaaaaagaga aaaggaaaga aaaagatgaa gctggtggcg
     101  gaaatgatgt gtcaaccagc acgaaaactg gagagagaga tagagatgtt
     151  aatgctggaa ccagtggaac ttttacagtt ccaaggataa aattattcaa
     201  tgacaagatg gttctaccaa gagttaaggg aaaaactgtc cttaatttga
     251  atcatcttct tcagtatagt ccacagcaaa ttgacatctc taatacgcgt
     301  gccacccagt ctcagtttga gagatggtac gagggggtga agaatgatta
     351  cggtcttaac gataatgaga tgcaagtgat gttgaatggc ttgatggttt
     401  ggtgtattga aaatggcaca tctccggaca tatctggtgt ctgggtaatg
     451  atggatggcg atactcaagt cgactatcca atcaagccct tgattgaaca
     501  tgcaactcct tcatttaggc agatcatggc tcacttcagc aacgcggcag
     551  aagcatacat tgcaaagaga aacgcaactg aaaagtacat gccgcgatat
     601  ggaatcaaaa gaaatttgac tgatactagt ctcgctagat atgctttcga
     651  tttttatgag gtgaattcaa aaacacctga tagagctcgt gaagctcaca
     701  tgcagatgaa agctgcagca ctacgaaact ctaatcgtag attatttggc
     751  atagacggta gtgtcagtag caaggaagaa aacacggaga gacacacagt
     801  ggaagatgtc aacagagaca tgcactctct cctgggtatg cgcaac