Sequence of DPV Narcissus yellow stripe virus
Narcissus yellow stripe virus isolate Marijiniup 3 polyprotein gene, partial cds.
ACC No: JQ395042
Dated: 2012-08-05 | Length: 6723 | CRC: -2079185840
ID JQ395042; SV 1; linear; genomic RNA; STD; VRL; 6723 BP.
XX
AC JQ395042;
XX
DT 20-MAY-2012 (Rel. 112, Created)
DT 05-AUG-2012 (Rel. 113, Last updated, Version 2)
XX
DE Narcissus yellow stripe virus isolate Marijiniup 3 polyprotein gene,
DE partial cds.
XX
KW .
XX
OS Narcissus yellow stripe virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-6723
RX PUBMED; 22569885.
RA Wylie S.J., Jones M.G.;
RT "Complete genome sequences of seven carlavirus and potyvirus isolates from
RT Narcissus and Hippeastrum plants in Australia, and proposals to clarify
RT their naming";
RL Arch. Virol. 157(8):1471-1480(2012).
XX
RN [2]
RP 1-6723
RA Wylie S.J., Jones M.G.K.;
RT ;
RL Submitted (10-JAN-2012) to the INSDC.
RL Plant Virus Group, WA State Agricultural Biotechnology Centre, Murdoch
RL University, South Street, Perth, WA 6150, Australia
XX
FH Key Location/Qualifiers
FH
FT source 1. .6723
FT /organism="Narcissus yellow stripe virus"
FT /host="Narcissus sp."
FT /isolate="Marijiniup 3"
FT /mol_type="genomic RNA"
FT /country="Australia"
FT /collected_by="S. Wylie"
FT /collection_date="01-Aug-2011"
FT /note="may be recombinant virus"
FT /db_xref="taxon:160843"
FT CDS <1. .6608
FT /codon_start=3
FT /product="polyprotein"
FT /protein_id="AFJ92907.1"
FT /translation="TVMKMLMVLSARAETNVELDLAGYNQIRATSIEVMEKNYLQILDD
FT QWRELSWSEKFYVVLRSSKFSLCTRKHLTPESTADLKGRYSESITSYFGQAKQTVNKKK
FT NQVRDKLTSYMKQVSSYSTRKFCSIMNFLVPDILKFINVLFVISLLLSIARECQHMLTT
FT HKNLKIKVAQNKIDTDMQQVDMWYRMYMLEHKEQPTKAEFLAYLEKQQPALLELFTQDE
FT EVEHQTKRRSEQELERVIAFVALVLMMFDCERSDCVTKILNKLKNLVSTAEPDVYHQSL
FT DDIEDDLSEKNLTVDFELTQDDSSTQSLSKERTFQEWWDHQILRGITIPHYRTEGYFIT
FT FTRSTALQVANSIAHDERNDILLVGAVGSGKSTGLPYHLSKKGNVLLLEPTRPLAENVH
FT KQLAQEPFYMNTTLRMRGLTAFGSAPITIMTTGFALHYFAHNRSRLNEYDFIILDECHV
FT HDANAMALRCLIHDNLYNGKLIKASATPPGREITFEPQHPVNIIPEETLSLQGFAQAQG
FT SKANCDVTQHGDNILVYVASYSEVDILSSLLMDKSFKVTKVDGRTMKIGRVEIVTSGTP
FT TKKHFIVATNIIENGVTLDVDVVVDFGTKVVPFLDSDNRMMCYNKVAINFGERIQRVGR
FT VGRYKPGTALRIGHTEKGLSEIPSSIATEAAFKCFTYGLPVITNNVTTSLLAHATVPQA
FT RTMAQFEITPFYMVHFVRFDGSMHPVLHSLFRKFKLRDSEIYLNKLAIPNKGLRNWMTG
FT SEYVRLGCNVDDRADIRIPFVCKGIPEKLHTEVWEVITKHKADAGFGRLSSAGACKIAY
FT TLQTDVTAIQRTVRIIDTLIAEERVKQEYFRTVTTNTISSSNFSLQSIANAIRSRFASD
FT HTLENIGILEAAKAQLCEFRNLSVDHSFSRLNDTISQNFIRDFGALETVQHQSTHEVSK
FT CLGMKGRWNASLITRDVLVLAGVLGGGIWMLLSHFHSSANEVVHHEAKGKRQRQKLKFR
FT QARDNKNGREVYGDDGTLEHFFGAAYREKGKVAGKVRGMGAKQRRFVNMYGFDPEDFSA
FT VRFVDPLTGATIDENPLVDIHLIQEHFTSVREALVDQDQLDVQLIRIQPGIQAYYTNNR
FT TGKALKIDLTPHNPLRSCDKKATIAGFPEREFELRQTGAPQSIRIDEVPKEQENPEVNH
FT ESASLFKGLRDYNPISSNVCKLTNSSDGHTDSLYGLGYGPLILTNRHLFERNNGELLIQ
FT TRNGDFSIRNTTQLHLFPIPDRDLILIRLPKDVPRFPQKLTFRSPVNNERICMVGSNFQ
FT AKSVSSLISESSTTLQVKGSNFWKHWISTKDGQCGTPIVSTKDGAILGLHSLSNFANSV
FT NYFSSFPEEFTKQFLDTHENHEWAKHWKYNTDSISWGSLNIKAAQPKGMFNAMKLVMDL
FT DDTAVYSQMARGGWMYNQLHGNLKAIASVPSQLVTKHTVKGKCQMFDLYLRLHDDERNF
FT FQPLMGFYQKSRLNKEAYAKDLLKYASVIEVGVVDSNIFEQAVEAVTSDLRTLGMQTCN
FT YITDENCIFDALNMKSAVGALYQGKKKDYFAEYTPQMKDQILFESCERLFKGEMGVWNG
FT SLKAELRPIEKVEANKTRTFTAAPIDTLLAGKVCVDDFNNQFYDYHLKGPWSVGMTKFY
FT GGWDTLLNKLPDGWVYCDADGSQFDSSLSPYIINAVLSIRHSFMEPWHIGERMLSNLYT
FT EIVYTPISTPDGTLVKKFKGNNSGQPSTVVDNTLMVIIAMRYSLLKAGIPISEHTNMCR
FT FLVNGDDLLLSLAPEYEHILDTFTSSFSELGLKYTFCSKTKNKADLWFMSHKGVLREGI
FT WIPKLEQERVVSILEWDRSKEPEHRLEAVCAAMIESWGYDQLTHEIRKFYSWLLSQAPY
FT SGLAQEGKAPYIAETALRKLYLDKDAEDSDIARYVEAILEDYTEGEVFDVYHQSGKQSL
FT DAGLEEDKSQNSKEKPSIIGEPSKVGTLSNRDKDINVGVQGSFPVPRLKFLTGKMSVPV
FT YNKRPILNLAHLISYTPNQVDLANTRATQSQFATWYDGVKEDYDVDDAKMAIILNGLMV
FT WCIENGTSPNINGVWVMMDGDEQVEFPLKPIIDHAKPTLRQIMAHFSNVAEAYIEKRNH
FT DRPYMPRYGLQRNLTDISLARFAFDFYEMTSRTPIRAREAHIQMKAAALRGAKNHLFGL
FT DGNVGTAEENTERHTTDDVNRNMHNLLGVRGV"
FT mat_peptide <1. .638
FT /product="P3"
FT mat_peptide 684. .839
FT /product="6K1"
FT mat_peptide 840. .2771
FT /product="CI"
FT mat_peptide 2772. .2930
FT /product="6K2"
FT mat_peptide 2931. .3503
FT /product="VPg"
FT mat_peptide 3504. .4232
FT /product="Nia-Pro"
FT mat_peptide 4233. .5783
FT /product="NIb"
FT mat_peptide 5784. .6605
FT /product="CP"
FT 3'UTR 6609. .6723
XX
SQ Sequence 6723 BP; 2185 A; 1354 C; 1564 G; 1619 T; 1 other;
jq395042 Length: 6723 05-AUG-2012 Type: N Check: 5210 ..
1 atacggtgat gaaaatgctg atggtcctgt cggcacgagc tgaaacgaac
51 gtggaattgg atttggctgg ctataatcaa ataagagcaa caagcataga
101 ggtgatggaa aaaaattatc tgcagatctt agacgaccaa tggcgagaat
151 taagttggtc ggaaaagttc tacgtagtgt tgcgatcgtc aaaattctct
201 ctatgtacac gaaagcattt aacaccagaa agcacagcag atttaaaagg
251 cagatacagc gaatcgatca cctcgtattt tggacaagca aaacaaacag
301 tgaacaagaa aaagaatcaa gtcagggaca agcttactag ctacatgaag
351 caagtaagct cttattcaac acgcaaattt tgttccataa tgaattttct
401 tgtgcctgac attttgaagt ttatcaacgt cctttttgta attagcttgc
451 tattgtccat tgcacgggag tgccagcaca tgctaacaac acacaaaaat
501 ctcaaaataa aggtggcgca aaataaaatt gacacggaca tgcaacaggt
551 ggacatgtgg tacagaatgt atatgcttga gcataaagag caaccaacaa
601 aagcagaatt cttggcgtat ctcgaaaagc agcaacctgc gttactggag
651 ctattcaccc aagatgaaga agttgaacac caaacaaaaa ggcgctcaga
701 acaggagctg gagagggtta tagcatttgt ggcactagtg cttatgatgt
751 ttgactgtga acggagcgac tgtgtcacaa aaattttgaa taaactcaag
801 aatctggttt ccacagcaga accagatgtc taccatcaat ctctggatga
851 tatcgaagat gatctgagtg agaaaaatct cacagttgat tttgaactca
901 cacaggatga tagctcaaca caaagtttat caaaggagcg gacatttcag
951 gagtggtggg accatcaaat cctaaggggg ataaccatac cacactaccg
1001 cacagaggga tatttcatca cattcacgcg gtctacggcg ctccaggtgg
1051 ccaacagtat agctcatgat gaacgaaacg acattctact tgttggagcc
1101 gtgggatctg gaaaatcgac tggtttacca tatcatctct ctaagaaggg
1151 caatgtttta ctacttgaac caacgcgccc tctagccgaa aatgtacata
1201 aacagttagc gcaggaacca ttctacatga acacaacttt gagaatgcgt
1251 ggactaacag catttggatc agccccaatc acaataatga caacaggttt
1301 tgcactccac tatttcgcgc acaataggag ccgtctgaat gagtacgatt
1351 tcataatact cgatgaatgc cacgtacacg atgctaatgc gatggcactt
1401 aggtgtctga tacacgacaa tctgtataat ggaaaactga taaaagcatc
1451 agccacacca cctgggcgag aaataacgtt tgaaccacaa cacccagtga
1501 acatcatacc cgaggagaca ctctcattgc aaggattcgc acaagcacag
1551 ggaagcaaag caaattgtga tgtaacacaa cacggtgata acatacttgt
1601 gtatgttgcg agctatagtg aagttgatat cctaagctca ctactaatgg
1651 ataaaagttt caaagtgacg aaggttgatg gacgaacaat gaagattgga
1701 cgagtggaga ttgtcacgag tggaacccca acaaagaagc acttcatagt
1751 ggcaacgaac attattgaaa atggggtgac acttgacgtg gatgtggtgg
1801 ttgactttgg aacaaaagta gtgccatttc ttgatagcga taataggatg
1851 atgtgctaca acaaggttgc cattaacttc ggagagcgca tacaaagggt
1901 cggtcgtgtt gggagatata agccaggaac agccttgcgc atcggacaca
1951 ctgagaaagg attgagcgag atcccaagta gcattgcaac agaagccgca
2001 tttaaatgtt ttacgtatgg gttgccggtt atcacgaata atgttacgac
2051 tagtctactc gctcacgcaa ctgtgccaca agcgcgaacc atggctcagt
2101 tcgagataac accattttac atggtgcatt ttgtacgctt tgatggttca
2151 atgcatccag tgttacatag tctgtttagg aagtttaaat tgcgtgactc
2201 agagatatat cttaataaac ttgccatacc aaacaaagga ctgcggaact
2251 ggatgacagg atctgaatat gtacgcttgg gctgtaatgt tgacgataga
2301 gcagacatcc gaatcccgtt tgtgtgcaaa ggcataccag agaaactcca
2351 cactgaagtg tgggaggtaa taaccaagca caaggctgac gctgggtttg
2401 ggcgactttc cagcgctggc gcctgtaaaa tagcttacac attgcagacg
2451 gatgtcacag caatacaacg aacagtgaga ataattgaca cacttatagc
2501 tgaggaacgt gtgaagcagg aatattttag aacagtcaca acaaacacca
2551 tttcctcatc aaatttctca ctacagagca tcgcaaacgc gattcggtca
2601 cgctttgcat cggatcacac actggagaat ataggcatac ttgaagcagc
2651 gaaggcacaa ctttgcgagt ttcgaaatct gagtgtggac cactctttca
2701 gtcggttgaa cgacaccatc tcgcagaact tcatacgaga ttttggagca
2751 cttgaaactg ttcaacatca atctacacac gaagtgagca aatgtcttgg
2801 tatgaaagga cgctggaatg caagcttgat aacaagagac gtgttggtct
2851 tagctggggt gctaggagga ggaatctgga tgttgctatc acactttcac
2901 agttcagcca acgaggtagt gcaccacgaa gcgaaaggga agcgacaaag
2951 gcaaaagctc aagtttcgtc aagccagaga caacaaaaat ggtcgagaag
3001 tttacggtga tgacggaact ttagaacatt tctttggtgc agcatacaga
3051 gaaaagggaa aggtcgccgg taaagtacgt ggaatgggag caaaacagag
3101 aaggtttgtc aacatgtatg ggtttgaccc agaagacttc tcagctgttc
3151 gatttgttga cccactcacc ggtgcgacga ttgatgagaa ccctctggtt
3201 gatatacatt taattcaaga acacttcact agtgttcgcg aagcattagt
3251 tgatcaagac cagctggatg tgcaactaat tcgaatccaa ccaggtatcc
3301 aagcttatta cacaaacaat cgcacgggaa aagcactgaa aattgattta
3351 acaccacaca atccactccg atcgtgtgat aagaaagcga cgatagctgg
3401 attccctgaa agagaatttg agttgaggca aaccggtgca ccacagagta
3451 tccgcattga cgaagttccg aaggagcaag aaaatccaga ggttaatcac
3501 gagagtgcat cacttttcaa gggtttgaga gactacaatc caatttcgag
3551 taatgtctgt aagttaacga acagttctga cgggcataca gactcattat
3601 atggtcttgg atatggtccc ctcatcctaa caaacagaca tctgtttgag
3651 cgcaacaatg gggaattatt aatccaaacg cgaaatggtg atttctcaat
3701 caggaataca acacaattgc atctgtttcc tatcccagat agagatctaa
3751 tactgattcg cctacccaag gatgtgccac ggtttccaca aaaactgacc
3801 ttcagatcac cagtcaacaa tgagcgtata tgcatggtcg gctcaaactt
3851 tcaagcaaag agtgtttcta gtctaatctc agagtcgagc acaaccctac
3901 aagtgaaagg aagtaacttt tggaagcatt ggataagcac caaagatggg
3951 cagtgcggaa cacccatagt aagtacgaag gatggtgcta ttctcggact
4001 acacagttta tcgaactttg ccaactctgt gaattatttc tctagctttc
4051 cagaggaatt cacaaaacaa ttcttggaca cacacgaaaa tcatgagtgg
4101 gcaaaacact ggaaatacaa cacagatagc ataagctggg ggtcgttaaa
4151 cataaaagct gcacaaccaa aaggaatgtt taatgcaatg aaacttgtaa
4201 tggacttaga tgacacagct gtctattcac agatggcgag aggcggatgg
4251 atgtacaacc agttgcatgg taacttaaaa gcaattgcat ccgtacctag
4301 tcaattggtc actaaacata cggtgaaagg caagtgtcag atgtttgact
4351 tgtacctgcg gttacatgac gatgagcgca acttcttcca acccctgatg
4401 ggattttatc agaagagcag actaaacaag gaagcatatg ctaaggatct
4451 tcttaaatac gcatcagtaa ttgaagtggg tgtcgttgat agcaacatat
4501 ttgagcaagc agttgaggca gttacatcag acttgagaac attaggtatg
4551 cagacttgca actacatcac tgatgaaaac tgcatttttg acgccttaaa
4601 catgaaatct gcggttggtg ccctttacca aggaaagaag aaagattatt
4651 ttgcggaata cacaccacag atgaaagatc agatcctatt cgagagttgc
4701 gagcgtctgt tcaaaggaga aatgggcgtg tggaatggtt cattgaaggc
4751 agagctacgg cccattgaaa aggttgaagc aaacaaaaca cgcaccttca
4801 cagctgcacc aatagacaca ttgttggctg ggaaagtttg tgtggacgac
4851 tttaacaatc agttttatga ctatcatttg aagggcccgt ggagcgtagg
4901 aatgacaaag ttttatggtg gttgggatac tctactcaac aaactgccag
4951 atggctgggt ctactgtgat gctgatggat cacaatttga tagctcactc
5001 tcaccatata tcataaacgc agttctgagt attcgacata gtttcatgga
5051 accatggcac attggtgaga gaatgttatc aaatttgtat acggaaattg
5101 tctacacacc gatatcaacg ccagatggaa ccctagtgaa gaagttcaag
5151 ggaaacaata gtggacagcc atcaactgtg gttgataaca cactaatggt
5201 tatcatcgcc atgcggtact cactcctaaa agctggaatt ccaattagtg
5251 agcacacaaa tatgtgtaga ttcttggtga atggggatga cttgttgtta
5301 agcttagcac ctgagtatga acacatacta gacacgttta caagcagctt
5351 ttcagagctc ggattgaaat acacattttg ttctaaaaca aagaataaag
5401 ctgacttgtg gttcatgtcg cataagggtg ttttgcgtga aggaatatgg
5451 atcccaaaat tagaacaaga acgagttgtg tcaattcttg aatgggacag
5501 atcaaaggag ccagaacaca gacttgaggc tgtttgcgca gcaatgattg
5551 aatcatgggg ctatgaccaa ctgacacatg aaatacggaa attttactcg
5601 tggttgttgt ctcaagcacc atacagtgga cttgcgcagg aaggaaaggc
5651 accctacatc gccgaaacgg ctctcagaaa gttgtacctc gataaagatg
5701 ctgaggatag tgacatagca cgatacgtcg aagcgatatt ggaagactac
5751 actgagggtg aggtcttcga cgtctatcat caatctggga aacagtcact
5801 tgatgcagga ttggaagagg acaagagtca aaatagcaag gaaaaaccca
5851 gcatcatagg agaaccgagt aargtaggga ctttgagcaa tcgcgacaaa
5901 gacatcaatg ttggtgttca aggcagtttt cctgtgccta ggctcaagtt
5951 tttgacaggg aaaatgagtg tcccagtgta caacaagcgt ccaatcttaa
6001 acttggcgca cctcatatca tacacaccta accaagttga cctggctaac
6051 acaagagcaa cacaaagcca gttcgcaaca tggtatgatg gtgtgaagga
6101 ggattacgac gtggacgatg ccaagatggc gataatcctc aacggactaa
6151 tggtttggtg cattgaaaac ggcacctcac caaatataaa tggagtgtgg
6201 gtgatgatgg atggcgacga gcaagttgaa ttcccactaa agccaatcat
6251 cgatcacgcc aagcccacac tcaggcaaat aatggcccat ttcagtaacg
6301 ttgctgaagc gtatattgaa aagagaaacc acgaccgacc atacatgcca
6351 cgatatggtc ttcagcgtaa tttaaccgac ataagcctag cacgctttgc
6401 ttttgacttc tatgagatga cgtcaagaac accaatccgc gcacgggaag
6451 cacatattca gatgaaggca gccgcgttac gcggagctaa gaatcatttg
6501 tttggattgg acggaaatgt cgggacagca gaagagaaca cggaaagaca
6551 cactaccgat gacgtaaata ggaacatgca taacctcttg ggcgtaagag
6601 gtgtgtaact gttgtgtgtt agtatttata ctttaatata tataaatact
6651 cgttagtatt ctcactatta gagaaatatt ctatatgaag tgatggttag
6701 ttgggtttta cccagagtgc cgg