Sequence of DPV Potato virus Y

Potato virus Y isolate PK coat protein gene, partial cds.

ACC No: JQ518266

Dated: 2012-03-20 | Length: 795 | CRC: 1932124841

                
ID   JQ518266; SV 1; linear; genomic RNA; STD; VRL; 795 BP.
XX
AC   JQ518266;
XX
DT   20-MAR-2012 (Rel. 112, Created)
DT   20-MAR-2012 (Rel. 112, Last updated, Version 1)
XX
DE   Potato virus Y isolate PK coat protein gene, partial cds.
XX
KW   .
XX
OS   Potato virus Y
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-795
RA   Abbas M.F., Hameed S., Rauf A.;
RT   ;
RL   Submitted (28-JAN-2012) to the INSDC.
RL   Crop Diseased Research Programme, National Agricultural Research Centre
RL   Islamabad, Park Road Islamabad, Islamabad, Federal 45500, Pakistan
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .795
FT                   /organism="Potato virus Y"
FT                   /host="Solanum tuberosum"
FT                   /isolate="PK"
FT                   /mol_type="genomic RNA"
FT                   /country="Pakistan"
FT                   /lat_lon="33.4 N 73.1 E"
FT                   /collected_by="Muhammad Fahim Abbas"
FT                   /collection_date="08-Sep-2010"
FT                   /identified_by="Muhammad Fahim Abbas"
FT                   /PCR_primers="fwd_name: spvy-cp-f, fwd_seq:
FT                   atgacacaattgatgcagg, rev_name: spvy-cp-r, rev_seq:
FT                   tcacatgttcttgactcc"
FT                   /db_xref="taxon:12216"
FT   CDS             <1. .>795
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="AFD36226.1"
FT                   /translation="DTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHTVPRI
FT                   KAITSKMRMPKSKGATVLNLKHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGET
FT                   EMPTVMNGLMVWCIENGTSPNINGVWVMMDGDEQVEYPLKPIVENAKPTLRQIMAHFSD
FT                   VAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAA
FT                   LKSAQSRLFGLDGGISTQEENPERHSAEHVSPSVGTLLGVKNM"
XX
SQ   Sequence 795 BP; 272 A; 161 C; 189 G; 173 T; 0 other;

jq518266 Length: 795  20-MAR-2012  Type: N  Check: 1030  ..

       1  gacacaattg atgcaggagg aagcactaag aaggatgcaa aacaagagca
      51  aggtagcatt caaccaaatc tcaacaagga aaaggaaaag gacgtgaatg
     101  ttggaacatc tggaactcat actgtgccac gaattaaagc tatcacgtcc
     151  aaaatgagaa tgcccaagag taaaggtgca actgtactaa atttgaaaca
     201  cttactcgag tatgctccac agcaaattga catctcaaat actcgagcaa
     251  ctcaatcaca gtttgatacg tggtatgaag cggtacaact tgcatacgac
     301  ataggagaaa ctgaaatgcc aactgtgatg aatgggctta tggtttggtg
     351  cattgaaaat ggaacctcgc caaacatcaa cggagtttgg gttatgatgg
     401  atggagatga acaagtcgaa tacccactga aaccaatcgt tgagaatgca
     451  aaaccaacac ttaggcaaat catggcacat ttctcagatg ttgcagaagc
     501  gtatatagaa atgcgcaaca aaaaggaacc atatatgcca cgatatggtt
     551  tagttcgtaa tctgcgcgat ggaagtttgg ctcgctatgc ttttgacttt
     601  tatgaggtca catcacgaac accagtgagg gctagggaag cgcacattca
     651  aatgaaggcc gcagcattga aatcagccca atctcgactt ttcgggttgg
     701  acggtggcat cagtacacaa gaggagaacc cagagagaca cagcgccgag
     751  catgtctctc caagtgtggg tactctactt ggagtcaaga acatg