Sequence of DPV Sweet potato leaf curl Sao Paulo virus
Sweet potato geminivirus strain SPLCSPV-[ZA:WP:2011], complete genome.
ACC No: JQ621844
Dated: 2012-07-31 | Length: 2769 | CRC: 936779868
ID JQ621844; SV 1; circular; genomic DNA; STD; VRL; 2769 BP. XX AC JQ621844; XX DT 31-JUL-2012 (Rel. 113, Created) DT 31-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE Sweet potato geminivirus strain SPLCSPV-[ZA:WP:2011], complete genome. XX KW . XX OS Sweet potato geminivirus OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus; OC unclassified Begomovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-2769 RX PUBMED; 22814698. RA Esterhuizen L.L., van Heerden S.W., Rey M.E., van Heerden H.; RT "Genetic identification of two sweet-potato-infecting begomoviruses in RT South Africa"; RL Arch. Virol. 0:0-0(2012). XX RN [2] RP 1-2769 RA Esterhuizen L.L., Van Heerden S.W., Rey C.M.E., Van Heerden H.; RT ; RL Submitted (03-FEB-2012) to the INSDC. RL Biochemistry, University of Johannesburg, Kingsway, Johannesburg, Gauteng RL 2006, South Africa XX FH Key Location/Qualifiers FH FT source 1. .2769 FT /organism="Sweet potato geminivirus" FT /host="Ipomoea batatas" FT /strain="SPLCSPV-[ZA:WP:2011]" FT /isolate="PstI-012" FT /mol_type="genomic DNA" FT /country="South Africa:Waterpoort" FT /collected_by="L.L. Esterhuizen" FT /collection_date="2011" FT /identified_by="L.L. Esterhuizen" FT /db_xref="taxon:1213429" FT gene 172. .444 FT /gene="V2" FT CDS 172. .444 FT /codon_start=1 FT /gene="V2" FT /product="V2" FT /protein_id="AFO66457.1" FT /translation="MSISAKYEPGTLGFELCSDLIRILRVRHYDRANARYAEISSVWGD FT TGKTETELRDRYRALHWECCPNCCPKLCPGFKKRTDEEKEGGSNP" FT gene 257. .1021 FT /gene="v1" FT CDS 257. .1021 FT /codon_start=1 FT /gene="v1" FT /product="coat protein" FT /protein_id="AFO66458.1" FT /translation="MTGRMRVTRRFHPYGGTPARRRLNFETAIVPYTGNAVPIAARSYV FT PVSRSVRMKRKKGDRIPKGCVGPCKVQDYEFKMDVPHSGTFVCVSDFTRGTGLTHRLGK FT RVCIKSMGIDGKVWMDDNVAKRDHTNIITYWLIRDRRPNKDPLTFVQAFTMYDNEPTTA FT KIRMDLRDRMQVLKKFSVTVSGGPYNHKEQALVRKFFNGLYNHVTYNHKEEAKYENHLE FT NALMLYSASSHASNPVYQTLRCRAYFYDSHNN" FT gene complement(1018. .1455) FT /gene="C3" FT CDS complement(1018. .1455) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer protein" FT /note="REn" FT /protein_id="AFO66453.1" FT /translation="MDSRTGESLSHAQITRAAEFFTNPMSVGQTAPFHLRLLYVHTNNI FT NTKKIMKFQLQVNHRNRREIGLQKIFLQFRIITTRLTGVIHSWTGILTRLKWRICNSLV FT SLGYFSLLNLVYVIRHLPQECLWVEEVDVIDCEDDIKLLLY" FT gene complement(1169. .1618) FT /gene="C2" FT CDS complement(1169. .1618) FT /codon_start=1 FT /gene="C2" FT /product="trans-activating protein" FT /note="TrAP" FT /protein_id="AFO66454.1" FT /translation="MSTPPSGYKRKCPQQEPIHEVAKKKQRKAPEPRTRIVWKGCGCSA FT FITNECKYQHGFTHRGITKSCTDYESSRILHQPHVCGSDCSVPPAVAVCTYKQHKHKED FT HEVPASSQPQEQEGNWIAKDISPVPNHNNASDWCYSQLDWYLDTP" FT gene complement(1527. .2621) FT /gene="C1" FT CDS complement(1527. .2621) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /note="Rep" FT /protein_id="AFO66455.1" FT /translation="MPRQPGFRVSAKNIFLTYPKCSLSKETALELLKAVNCPSDKLFIR FT VSQEEHQDGSLHLHALIQFKGKAQFKNPRHFDLQHPNSSNQFHPNFQGAKSSTDVKSYI FT EKDGDYIDWGTFQVDGRSARGGQQTANDAAAEALNADSAEAALQIIREKLPKDFIFQYH FT NLRNNLDRIFSPPPSVYCSPFSVSSFNNVPDIITDWAADNVMDAAARPDRPISIVIEGP FT SRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVNPQYLKHFKEFMGAQKDW FT QSNCKYGKPVQIKGGIPTIFLCNPGEGSSFKLWLDKPEQEAFKNWAVKNAVFCDVDTPF FT WIQEEVSPTGANSRGGQEEAEESS" FT gene complement(2207. .2464) FT /gene="C4" FT CDS complement(2207. .2464) FT /codon_start=1 FT /gene="C4" FT /product="C4" FT /protein_id="AFO66456.1" FT /translation="MGLCTSMLSSSSRVKPNLKTPDISTFNTPTAPTNSIQISRELNHQ FT QMSSPTSRRTVITSTGVLFRSTEDLLEEVSKQLMMRQQRP" XX SQ Sequence 2769 BP; 722 A; 574 C; 638 G; 835 T; 0 other; jq621844 Length: 2769 31-JUL-2012 Type: N Check: 2602 .. 1 accggtgccc gcgttcgttt tatggtgggc cccacacggc atctttaatc 51 attaaaaggc gcgtcaatta cgagactttg tcgccaagta tggatttgtg 101 ggatcctttg cagaacccat tacctgagac tttatacggt ctacggtgta 151 tggctcgagt ttttcagcaa gatgagtatt tcggcgaaat acgagcctgg 201 aaccctaggg ttcgagcttt gctccgattt aatccgcatt ttgcgggttc 251 gtcactatga cagggcgaat gcgcgttacg cggagatttc atccgtatgg 301 ggggacaccg gcaagacgga gactgaactt cgagaccgct atcgtgcctt 351 acactgggaa tgctgtccca attgctgccc gaagctatgt cccggtttca 401 agaagcgtac ggatgaagag aaagaagggg gatcgaatcc ctaaggggtg 451 tgtgggtccc tgtaaggtac aggattacga gtttaagatg gatgtcccgc 501 atagtggtac gtttgtttgt gtctcagatt ttactcgtgg tactgggctt 551 acccaccgat taggtaagag ggtgtgtatt aagtccatgg gtattgacgg 601 taaggtctgg atggacgaca acgtcgccaa gagggaccat accaacatca 651 ttacttactg gttgattcga gataggaggc ccaataagga ccctctgacg 701 tttgtacagg cctttactat gtatgataac gaacccacta ctgctaagat 751 ccgaatggat ctgagagata gaatgcaagt gttgaagaag ttttctgtta 801 ctgtatctgg tggcccttac aatcacaagg agcaggcttt ggttaggaag 851 ttttttaatg gattgtacaa tcatgttacc tataatcaca aggaagaagc 901 taagtacgaa aaccatttgg aaaatgcttt gatgttgtat tcagctagca 951 gtcatgctag taatcctgtg tatcagactc tgcgttgcag ggcttatttc 1001 tatgattcgc ataataatta ataaagaagt agttttatat catcttcgca 1051 atctattaca tccacttctt ctacccacaa acattcttgt ggtaaatgtc 1101 taattacata aactaaattc aacaatgaaa aataacctaa actaactaag 1151 ctattacaaa ttcgccattt aaggcgtgtc aagataccag tccaactgtg 1201 aataacacca gtcagacgcg ttgttatgat tcggaactgg agaaatatct 1251 tttgcaatcc aatttccctc ctgttcctgt ggttgacttg aagctggaac 1301 ttcatgatct tctttgtgtt tatgttgttt gtatgtacat acagcaaccg 1351 caggtggaac ggagcagtct gacccacaga catggggttg gtgaagaatt 1401 ctgctgctct cgtaatctgt gcatgactta gtgattcccc tgtgcgtgaa 1451 tccatgctgg tacttgcact cgttggttat gaaggctgag cagccgcaac 1501 ctttccacac tatcctggtc cttggttcag gagctttcct ctgcttcttc 1551 ttggccacct cgtgaattgg ctcctgttgg ggacacttcc tcttgtatcc 1601 agaagggggt gtcgacatca cagaaaactg cgttctttac cgcccagttt 1651 ttaaatgctt cttgctctgg cttgtccagc cagagtttaa atgaagatcc 1701 ttctcctgga ttgcagagga agatagtggg aattccacct ttaatttgaa 1751 ctggctttcc gtatttacaa ttactttgcc agtccttctg ggcccccata 1801 aattctttaa agtgctttag gtattggggg ttgacgtcat caatgacgtt 1851 ataccaagca ctgttgctat acacttttgg actcaagtcc aggtgtccac 1901 atagataatt atgtgggcct aaagacctag cccatactgt ttttcctatt 1951 ctacttgggc cttctataac aatactaatg ggcctatctg gccgcgcagc 2001 ggcatccatg acattatcag cggcccaatc ggtgataatg tcaggtacat 2051 tattgaaaga agaaacagaa aaaggagaac aataaaccga aggaggagga 2101 gaaaaaatcc tatctaaatt atttcgtaaa ttatggtatt gaaaaataaa 2151 atctttaggg agtttttccc taattatctg taatgctgct tcagcagaat 2201 ctgcgtttaa ggcctctgct gccgcatcat tagctgtttg ctgacctcct 2251 ctagcagatc ttccgtcgac ctgaaaagta ccccagtcga tgtaatcacc 2301 gtccttctcg atgtaggact tgacatctgt tgatgattta gctccctgga 2351 aatttggatg gaattggttg gagctgttgg ggtgttgaag gtcgaaatgt 2401 ctggggtttt taaattgggc tttacccttg aactggatga gagcatggag 2451 gtgcaaagac ccatcctgat gttcttcctg actaactctg ataaataatt 2501 tatcagacgg gcagtttact gcctttaata gctcaagagc tgtttcttta 2551 gaaagagagc atttgggata agtaaggaag atatttttag ctgacactct 2601 aaaacctggt tgacgaggca tattggtgtc cctcaaaact ctacggaatt 2651 ggtgtctttg gtgtctcatt tatacctgag acaccaatgg cattttggta 2701 attgatcacc tttaatttga attctgaaat cctattggtc ctccgtaaag 2751 cgggcaccgt attaatatt