Sequence of DPV Sweet potato leaf curl Sao Paulo virus
Sweet potato geminivirus strain SPLCSPV-[ZA:WP:2011], complete genome.
ACC No: JQ621844
Dated: 2012-07-31 | Length: 2769 | CRC: 936779868
ID JQ621844; SV 1; circular; genomic DNA; STD; VRL; 2769 BP.
XX
AC JQ621844;
XX
DT 31-JUL-2012 (Rel. 113, Created)
DT 31-JUL-2012 (Rel. 113, Last updated, Version 1)
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DE Sweet potato geminivirus strain SPLCSPV-[ZA:WP:2011], complete genome.
XX
KW .
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OS Sweet potato geminivirus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RC Publication Status: Available-Online prior to print
RP 1-2769
RX PUBMED; 22814698.
RA Esterhuizen L.L., van Heerden S.W., Rey M.E., van Heerden H.;
RT "Genetic identification of two sweet-potato-infecting begomoviruses in
RT South Africa";
RL Arch. Virol. 0:0-0(2012).
XX
RN [2]
RP 1-2769
RA Esterhuizen L.L., Van Heerden S.W., Rey C.M.E., Van Heerden H.;
RT ;
RL Submitted (03-FEB-2012) to the INSDC.
RL Biochemistry, University of Johannesburg, Kingsway, Johannesburg, Gauteng
RL 2006, South Africa
XX
FH Key Location/Qualifiers
FH
FT source 1. .2769
FT /organism="Sweet potato geminivirus"
FT /host="Ipomoea batatas"
FT /strain="SPLCSPV-[ZA:WP:2011]"
FT /isolate="PstI-012"
FT /mol_type="genomic DNA"
FT /country="South Africa:Waterpoort"
FT /collected_by="L.L. Esterhuizen"
FT /collection_date="2011"
FT /identified_by="L.L. Esterhuizen"
FT /db_xref="taxon:1213429"
FT gene 172. .444
FT /gene="V2"
FT CDS 172. .444
FT /codon_start=1
FT /gene="V2"
FT /product="V2"
FT /protein_id="AFO66457.1"
FT /translation="MSISAKYEPGTLGFELCSDLIRILRVRHYDRANARYAEISSVWGD
FT TGKTETELRDRYRALHWECCPNCCPKLCPGFKKRTDEEKEGGSNP"
FT gene 257. .1021
FT /gene="v1"
FT CDS 257. .1021
FT /codon_start=1
FT /gene="v1"
FT /product="coat protein"
FT /protein_id="AFO66458.1"
FT /translation="MTGRMRVTRRFHPYGGTPARRRLNFETAIVPYTGNAVPIAARSYV
FT PVSRSVRMKRKKGDRIPKGCVGPCKVQDYEFKMDVPHSGTFVCVSDFTRGTGLTHRLGK
FT RVCIKSMGIDGKVWMDDNVAKRDHTNIITYWLIRDRRPNKDPLTFVQAFTMYDNEPTTA
FT KIRMDLRDRMQVLKKFSVTVSGGPYNHKEQALVRKFFNGLYNHVTYNHKEEAKYENHLE
FT NALMLYSASSHASNPVYQTLRCRAYFYDSHNN"
FT gene complement(1018. .1455)
FT /gene="C3"
FT CDS complement(1018. .1455)
FT /codon_start=1
FT /gene="C3"
FT /product="replication enhancer protein"
FT /note="REn"
FT /protein_id="AFO66453.1"
FT /translation="MDSRTGESLSHAQITRAAEFFTNPMSVGQTAPFHLRLLYVHTNNI
FT NTKKIMKFQLQVNHRNRREIGLQKIFLQFRIITTRLTGVIHSWTGILTRLKWRICNSLV
FT SLGYFSLLNLVYVIRHLPQECLWVEEVDVIDCEDDIKLLLY"
FT gene complement(1169. .1618)
FT /gene="C2"
FT CDS complement(1169. .1618)
FT /codon_start=1
FT /gene="C2"
FT /product="trans-activating protein"
FT /note="TrAP"
FT /protein_id="AFO66454.1"
FT /translation="MSTPPSGYKRKCPQQEPIHEVAKKKQRKAPEPRTRIVWKGCGCSA
FT FITNECKYQHGFTHRGITKSCTDYESSRILHQPHVCGSDCSVPPAVAVCTYKQHKHKED
FT HEVPASSQPQEQEGNWIAKDISPVPNHNNASDWCYSQLDWYLDTP"
FT gene complement(1527. .2621)
FT /gene="C1"
FT CDS complement(1527. .2621)
FT /codon_start=1
FT /gene="C1"
FT /product="replication-associated protein"
FT /note="Rep"
FT /protein_id="AFO66455.1"
FT /translation="MPRQPGFRVSAKNIFLTYPKCSLSKETALELLKAVNCPSDKLFIR
FT VSQEEHQDGSLHLHALIQFKGKAQFKNPRHFDLQHPNSSNQFHPNFQGAKSSTDVKSYI
FT EKDGDYIDWGTFQVDGRSARGGQQTANDAAAEALNADSAEAALQIIREKLPKDFIFQYH
FT NLRNNLDRIFSPPPSVYCSPFSVSSFNNVPDIITDWAADNVMDAAARPDRPISIVIEGP
FT SRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVNPQYLKHFKEFMGAQKDW
FT QSNCKYGKPVQIKGGIPTIFLCNPGEGSSFKLWLDKPEQEAFKNWAVKNAVFCDVDTPF
FT WIQEEVSPTGANSRGGQEEAEESS"
FT gene complement(2207. .2464)
FT /gene="C4"
FT CDS complement(2207. .2464)
FT /codon_start=1
FT /gene="C4"
FT /product="C4"
FT /protein_id="AFO66456.1"
FT /translation="MGLCTSMLSSSSRVKPNLKTPDISTFNTPTAPTNSIQISRELNHQ
FT QMSSPTSRRTVITSTGVLFRSTEDLLEEVSKQLMMRQQRP"
XX
SQ Sequence 2769 BP; 722 A; 574 C; 638 G; 835 T; 0 other;
jq621844 Length: 2769 31-JUL-2012 Type: N Check: 2602 ..
1 accggtgccc gcgttcgttt tatggtgggc cccacacggc atctttaatc
51 attaaaaggc gcgtcaatta cgagactttg tcgccaagta tggatttgtg
101 ggatcctttg cagaacccat tacctgagac tttatacggt ctacggtgta
151 tggctcgagt ttttcagcaa gatgagtatt tcggcgaaat acgagcctgg
201 aaccctaggg ttcgagcttt gctccgattt aatccgcatt ttgcgggttc
251 gtcactatga cagggcgaat gcgcgttacg cggagatttc atccgtatgg
301 ggggacaccg gcaagacgga gactgaactt cgagaccgct atcgtgcctt
351 acactgggaa tgctgtccca attgctgccc gaagctatgt cccggtttca
401 agaagcgtac ggatgaagag aaagaagggg gatcgaatcc ctaaggggtg
451 tgtgggtccc tgtaaggtac aggattacga gtttaagatg gatgtcccgc
501 atagtggtac gtttgtttgt gtctcagatt ttactcgtgg tactgggctt
551 acccaccgat taggtaagag ggtgtgtatt aagtccatgg gtattgacgg
601 taaggtctgg atggacgaca acgtcgccaa gagggaccat accaacatca
651 ttacttactg gttgattcga gataggaggc ccaataagga ccctctgacg
701 tttgtacagg cctttactat gtatgataac gaacccacta ctgctaagat
751 ccgaatggat ctgagagata gaatgcaagt gttgaagaag ttttctgtta
801 ctgtatctgg tggcccttac aatcacaagg agcaggcttt ggttaggaag
851 ttttttaatg gattgtacaa tcatgttacc tataatcaca aggaagaagc
901 taagtacgaa aaccatttgg aaaatgcttt gatgttgtat tcagctagca
951 gtcatgctag taatcctgtg tatcagactc tgcgttgcag ggcttatttc
1001 tatgattcgc ataataatta ataaagaagt agttttatat catcttcgca
1051 atctattaca tccacttctt ctacccacaa acattcttgt ggtaaatgtc
1101 taattacata aactaaattc aacaatgaaa aataacctaa actaactaag
1151 ctattacaaa ttcgccattt aaggcgtgtc aagataccag tccaactgtg
1201 aataacacca gtcagacgcg ttgttatgat tcggaactgg agaaatatct
1251 tttgcaatcc aatttccctc ctgttcctgt ggttgacttg aagctggaac
1301 ttcatgatct tctttgtgtt tatgttgttt gtatgtacat acagcaaccg
1351 caggtggaac ggagcagtct gacccacaga catggggttg gtgaagaatt
1401 ctgctgctct cgtaatctgt gcatgactta gtgattcccc tgtgcgtgaa
1451 tccatgctgg tacttgcact cgttggttat gaaggctgag cagccgcaac
1501 ctttccacac tatcctggtc cttggttcag gagctttcct ctgcttcttc
1551 ttggccacct cgtgaattgg ctcctgttgg ggacacttcc tcttgtatcc
1601 agaagggggt gtcgacatca cagaaaactg cgttctttac cgcccagttt
1651 ttaaatgctt cttgctctgg cttgtccagc cagagtttaa atgaagatcc
1701 ttctcctgga ttgcagagga agatagtggg aattccacct ttaatttgaa
1751 ctggctttcc gtatttacaa ttactttgcc agtccttctg ggcccccata
1801 aattctttaa agtgctttag gtattggggg ttgacgtcat caatgacgtt
1851 ataccaagca ctgttgctat acacttttgg actcaagtcc aggtgtccac
1901 atagataatt atgtgggcct aaagacctag cccatactgt ttttcctatt
1951 ctacttgggc cttctataac aatactaatg ggcctatctg gccgcgcagc
2001 ggcatccatg acattatcag cggcccaatc ggtgataatg tcaggtacat
2051 tattgaaaga agaaacagaa aaaggagaac aataaaccga aggaggagga
2101 gaaaaaatcc tatctaaatt atttcgtaaa ttatggtatt gaaaaataaa
2151 atctttaggg agtttttccc taattatctg taatgctgct tcagcagaat
2201 ctgcgtttaa ggcctctgct gccgcatcat tagctgtttg ctgacctcct
2251 ctagcagatc ttccgtcgac ctgaaaagta ccccagtcga tgtaatcacc
2301 gtccttctcg atgtaggact tgacatctgt tgatgattta gctccctgga
2351 aatttggatg gaattggttg gagctgttgg ggtgttgaag gtcgaaatgt
2401 ctggggtttt taaattgggc tttacccttg aactggatga gagcatggag
2451 gtgcaaagac ccatcctgat gttcttcctg actaactctg ataaataatt
2501 tatcagacgg gcagtttact gcctttaata gctcaagagc tgtttcttta
2551 gaaagagagc atttgggata agtaaggaag atatttttag ctgacactct
2601 aaaacctggt tgacgaggca tattggtgtc cctcaaaact ctacggaatt
2651 ggtgtctttg gtgtctcatt tatacctgag acaccaatgg cattttggta
2701 attgatcacc tttaatttga attctgaaat cctattggtc ctccgtaaag
2751 cgggcaccgt attaatatt