Sequence of DPV Sweet potato feathery mottle virus
Sweet potato feathery mottle virus P1 protein mRNA, partial cds.
ACC No: JQ742091
Dated: 2012-07-29 | Length: 2067 | CRC: -991217129
ID JQ742091; SV 1; linear; mRNA; STD; VRL; 2067 BP.
XX
AC JQ742091;
XX
DT 29-JUL-2012 (Rel. 113, Created)
DT 29-JUL-2012 (Rel. 113, Last updated, Version 1)
XX
DE Sweet potato feathery mottle virus P1 protein mRNA, partial cds.
XX
KW .
XX
OS Sweet potato feathery mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-2067
RX PUBMED; 22623784.
RA Szabo E.Z., Manczinger M., Goblos A., Kemeny L., Lakatos L.;
RT "Switching on RNA silencing suppressor activity by restoring argonaute
RT binding to a viral protein";
RL J. Virol. 86(15):8324-8327(2012).
XX
RN [2]
RP 1-2067
RA Lakatos L.;
RT ;
RL Submitted (06-MAR-2012) to the INSDC.
RL Departemnt of Dermatology and Allergology, University of Szeged, 6. Koranyi
RL Fasor, Szeged, Csongrad H-6720, Hungary
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FH Key Location/Qualifiers
FH
FT source 1. .2067
FT /organism="Sweet potato feathery mottle virus"
FT /host="sweet potato"
FT /isolate="Nigerian"
FT /mol_type="mRNA"
FT /country="Nigeria"
FT /db_xref="taxon:12844"
FT CDS 1. .>2067
FT /codon_start=1
FT /product="P1 protein"
FT /note="putative protease"
FT /protein_id="AFO37725.1"
FT /translation="MATVIVSAKPAGKRKLTWKECCNKWGKAAMEQQQQQQSKKTVHLG
FT RDHLAAYLLAFVPDTEWHKYYYGNRGGPSPALLILKGAIEYGEVYKWESELTFCAECDD
FT VLDGHKCDSCGHHYIRRDDNIADSMNDIARALGGYDAYCASNWAVYETAKYELDQVAPT
FT AGMLYKQAKEAEKLLGKRPTRREIQEVEDLWAEYEEAAAKEAAEASEASNEYATSEVVN
FT KTAYLSDEEDDEAFPPLVITIEKVAPATTIIESVPEANKTPEIQAPLVSAPEVSVSTTF
FT VEATNNGEDEQLPTQEQFTKNANCSAANPITLGDVSLGDIQFGTISCALGQIKVQETET
FT AKESTTGFFFGTIPAIIPLPTIPIMKLEFAIVEPIATPVVEITSNEIVGVPIAAPTEME
FT EAPKAPLPKHLYPWTSKTQTPGEVHHKMVRKWVQKTQQAAAEKEKLVWEKLDEQLAARN
FT EARKDLKVKWRWGLYRLVRKTRKNNQRQRRQKRIEKEQQLLTAMPPQILTSISIAGGPV
FT ASLEVTPTLNGKIFCTPSMKKKRTLKSPTLTQKRIHELMQAVLKIACKKEMNVELVGKK
FT PTRGQYKKFQGAKHLFLHLKHMKGLRESVDLRVHPTTQDIVLQAAKVGAWEKLIKTVTL
FT SKGSSGLVMNLDKLLGPRGHAPQGMFVVRGAFKGVLYDARMKLGRSALPYIAQF"
XX
SQ Sequence 2067 BP; 654 A; 458 C; 513 G; 442 T; 0 other;
jq742091 Length: 2067 29-JUL-2012 Type: N Check: 6778 ..
1 atggcaactg ttattgtatc tgcgaaaccg gctggtaagc gaaagcttac
51 atggaaggaa tgctgcaaca agtgggggaa ggctgcaatg gaacagcagc
101 aacagcaaca gtctaagaag actgttcatt tgggacgtga ccatctggct
151 gcgtaccttc ttgcatttgt gccagacact gaatggcaca aatactatta
201 tggcaaccgt gggggaccat ctcctgctct acttattctg aagggcgcta
251 ttgaatacgg tgaagtttat aagtgggaat ctgaactcac tttctgtgct
301 gaatgtgatg atgtcctgga tggacacaag tgtgacagct gcggacacca
351 ctacattaga cgcgatgaca atatcgcgga tagcatgaac gacatcgcta
401 gagcgttagg agggtatgat gcatactgtg catctaactg ggcagtgtat
451 gaaactgcca aatatgagct tgatcaagtc gcacccacag ctggcatgct
501 gtacaagcag gccaaggagg ctgagaaatt gttggggaag cgcccaacaa
551 gacgggaaat tcaagaggtt gaggacctct gggctgaata tgaggaagca
601 gctgcaaagg aggcagctga ggcgtctgag gcctcaaatg aatatgccac
651 gtctgaggtg gtaaacaaga cagcatacct cagcgatgaa gaggatgatg
701 aagcattccc acctcttgtg ataactattg aaaaggtggc acctgctacg
751 actatcattg aatccgtccc agaagcaaat aaaacccctg aaattcaggc
801 acctcttgtg tctgcaccag aagtatcagt atcaaccaca tttgtggagg
851 ctactaacaa cggagaagat gaacagcttc caacccagga gcaattcacg
901 aagaatgcta attgctcagc agccaaccct atcactcttg gggatgtgtc
951 acttggcgac atccagttcg gcacaatttc ttgcgcatta ggacaaatta
1001 aagtccaaga aactgagacc gctaaggagt caaccactgg cttcttcttt
1051 ggaaccatcc ctgctatcat tccactccca actattccaa tcatgaaatt
1101 ggaatttgct attgttgaac ctattgccac acctgtggtg gagatcacaa
1151 gtaacgaaat tgtgggagtc ccgatcgcag ctcccactga gatggaagaa
1201 gcgccaaaag caccattacc aaaacattta tacccttgga catctaaaac
1251 tcaaacacct ggtgaagtgc accacaagat ggtgcgtaaa tgggttcaga
1301 aaactcaaca agctgcagca gagaaagaaa aactcgtctg ggaaaaactg
1351 gacgaacaat tggctgcaag gaacgaggcc agaaaggacc tcaaagtgaa
1401 atggaggtgg gggctctaca gactggtcag aaagaccagg aagaacaacc
1451 aaagacagcg ccgacagaag cgcatagaga aggaacaaca attactgacg
1501 gccatgccac cgcaaattct gacgagtatc tccattgctg ggggtcctgt
1551 agcgagtctg gaagtgactc caactctgaa tgggaagatt ttctgcacgc
1601 cttctatgaa gaagaagaga actttaaaat ctcccacgct aacacaaaag
1651 agaatccacg agctcatgca agcagtcctg aaaatagctt gcaaaaagga
1701 gatgaatgta gagttagtag gcaagaaacc cacaagaggc caatacaaga
1751 aatttcaagg agcaaagcat ttattccttc atttaaaaca tatgaaaggc
1801 ctcagagaat cagtggattt aagagttcac ccaacaactc aagatatcgt
1851 actgcaagcc gccaaggttg gggcatggga gaagttaata aagacagtaa
1901 cattatccaa aggttcaagt ggtctagtca tgaacctaga caagctgctg
1951 ggtccacggg gtcacgcacc acaaggaatg ttcgtggtac gtggggcttt
2001 caaaggagtg ttatacgacg cacggatgaa gcttggtagg tctgctctgc
2051 catatatcgc ccagttt