Sequence of DPV Groundnut bud necrosis virus

Groundnut bud necrosis virus isolate onion-Vizag nucleocapsid protein gene, complete cds.

ACC No: JQ809456

Dated: 2012-06-13 | Length: 831 | CRC: 604309588

                
ID   JQ809456; SV 1; linear; genomic RNA; STD; VRL; 831 BP.
XX
AC   JQ809456;
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DT   13-JUN-2012 (Rel. 113, Created)
DT   13-JUN-2012 (Rel. 113, Last updated, Version 1)
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DE   Groundnut bud necrosis virus isolate onion-Vizag nucleocapsid protein gene,
DE   complete cds.
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KW   .
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OS   Groundnut bud necrosis virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN   [1]
RP   1-831
RA   Sujitha A., Bhaskara Reddy B.V., Sivaprasad Y., Usha R.,
RA   Giridhar Krishna T.;
RT   "Molecular characterization of Groundnut bud necrosis virus infecting
RT   various crops in India";
RL   Unpublished.
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RN   [2]
RP   1-831
RA   Sujitha A., Bhaskara Reddy B.V., Sivaprasad Y., Usha R.,
RA   Giridhar Krishna T.;
RT   ;
RL   Submitted (21-MAR-2012) to the INSDC.
RL   Genomics Lab, Institute of Frontier Technology, Regional Agricultural
RL   Research Station, Acharya N.G. Ranga Agricultural University, Tirupati,
RL   Andhra Pradesh 517502, India
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FH   Key             Location/Qualifiers
FH
FT   source          1. .831
FT                   /organism="Groundnut bud necrosis virus"
FT                   /host="Allium cepa (onion)"
FT                   /isolate="onion-Vizag"
FT                   /mol_type="genomic RNA"
FT                   /country="India:Vizag, Andhra Pradesh"
FT                   /collection_date="Jan-2012"
FT                   /db_xref="taxon:198612"
FT   CDS             1. .831
FT                   /codon_start=1
FT                   /product="nucleocapsid protein"
FT                   /protein_id="AFL90631.1"
FT                   /translation="MSNVKQLTEKKIKELLAGGSADVEIETEDSTPGFSFKAFYDANKT
FT                   LEITFTNCLNILKCRKQIFAACKSGKYVFCGKTIVATNTDVGPDDWTFKRTKAFIRTKM
FT                   ASMVEKSKNDAAKQEMYNKIMELPLVAAYGLNVPASFDTCALRMMLCIGGPLPLLSSMT
FT                   GLAPIIFPLAYYQNVKKEKLGIKNFSTYGQVCKVAKVLSASQIEFKNELEEMFKSAVKL
FT                   LSESNPGTASSISLKKYDEQVKYMDKAFSASLSMDDYGEHSKKKSSKAGPSLEL"
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SQ   Sequence 831 BP; 271 A; 141 C; 179 G; 240 T; 0 other;

jq809456 Length: 831  13-JUN-2012  Type: N  Check: 4157  ..

       1  atgtctaacg tcaagcagct caccgagaag aaaatcaaag aacttttggc
      51  tggtggctct gcagatgttg aaattgaaac agaagattct actcccggat
     101  ttagctttaa agctttctat gatgctaaca aaactcttga aataactttc
     151  acaaactgtt tgaatatttt gaagtgcagg aagcagatct ttgctgcttg
     201  taaaagtggt aagtatgttt tttgtggtaa aactattgtt gctacgaata
     251  ctgacgtagg gccagatgac tggaccttca aaaggacaaa agcttttatc
     301  aggaccaaaa tggctagtat ggttgaaaag agcaagaatg atgctgctaa
     351  gcaggagatg tacaataaaa taatggaatt accattagtg gcagcttatg
     401  gattaaatgt tcccgcgtct tttgatacat gtgctttaag gatgatgctc
     451  tgcattggag gtcctctgcc tctcttgtct agcatgacag gtctggcacc
     501  aattatattc cctctggctt attatcaaaa tgtgaagaaa gagaaattag
     551  gaattaagaa cttttctact tatggacagg tttgcaaagt agccaaagta
     601  ctttctgctt cacagattga attcaaaaat gaactagagg aaatgtttaa
     651  atcagctgta aagctattga gtgagagcaa ccctggaaca gccagctcta
     701  tctcactcaa gaaatatgat gaacaagtca aatacatgga caaagctttc
     751  agtgccagtc tctcaatgga tgattatggt gaacattcta agaagaagag
     801  ttcaaaggct ggtccttcgc tggaattgta a