Sequence of DPV Iris yellow spot virus

Iris yellow spot virus isolate TJ_O4_2 nucleocapsid protein (N) gene, complete cds.

ACC No: JQ814628

Dated: 2012-10-23 | Length: 822 | CRC: -1667811441

                
ID   JQ814628; SV 1; linear; genomic RNA; STD; VRL; 822 BP.
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AC   JQ814628;
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DT   23-OCT-2012 (Rel. 114, Created)
DT   23-OCT-2012 (Rel. 114, Last updated, Version 1)
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DE   Iris yellow spot virus isolate TJ_O4_2 nucleocapsid protein (N) gene,
DE   complete cds.
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KW   .
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OS   Iris yellow spot virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN   [1]
RP   1-822
RA   Alabi O.J., Saidov N., Muniappan R., Naidu R.A.;
RT   "First report of Iris yellow spot virus in onion in Tajikistan";
RL   Unpublished.
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RN   [2]
RP   1-822
RA   Alabi O.J., Saidov N., Muniappan R., Naidu R.A.;
RT   ;
RL   Submitted (22-MAR-2012) to the INSDC.
RL   Department of Plant Pathology, Washington State University Irrigated
RL   Agriculture Research and Extension Center, 24106 N. Bunn Rd., Prosser, WA
RL   99350, USA
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CC   ##Assembly-Data-START##
CC   Assembly Method       :: Bioedit v. 7.1.3
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1. .822
FT                   /organism="Iris yellow spot virus"
FT                   /host="Allium cepa (bulb onion)"
FT                   /isolate="TJ_O4_2"
FT                   /mol_type="genomic RNA"
FT                   /country="Tajikistan:Dushanbe"
FT                   /collection_date="Jun-2011"
FT                   /db_xref="taxon:60456"
FT   gene            1. .819
FT                   /gene="N"
FT   CDS             1. .819
FT                   /codon_start=1
FT                   /gene="N"
FT                   /product="nucleocapsid protein"
FT                   /protein_id="AFV13965.1"
FT                   /translation="MSTARVKASEIEKLLSGGDANVVIESDETEGFNFKNFVVANEGIR
FT                   MTFNNGYTILRNRAGIYKTIKSGKFTFQNKPIIIPSANVSPNQDDWTFRRLEGFIRARM
FT                   LVELLETKNEKEKQKMYEKICGLPLVSAYGLKPSDKFDATTARIMLTLGGPLTLLASLD
FT                   SFAAAALPLAYFQNVKKEALGISRFSTYEQLCKVARVMAAKEFKFTDRYKKIFDETVKI
FT                   LTKCTPGTSGAASLVKFNEQIQILEGAFGKIVEDIGESSKPKNPSKNDRY"
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SQ   Sequence 822 BP; 278 A; 152 C; 178 G; 214 T; 0 other;

jq814628 Length: 822  23-OCT-2012  Type: N  Check: 7406  ..

       1  atgtctactg caagggtaaa agcttcagaa attgagaaac ttctctctgg
      51  tggagatgca aatgtggtaa ttgaatctga tgaaactgaa ggattcaatt
     101  tcaagaactt tgtggtggca aatgagggta tccgaatgac attcaataat
     151  ggttacacta ttcttagaaa cagagcaggt atctacaaga caataaaatc
     201  agggaaattc acattccaaa acaaacccat tattattccc agtgctaatg
     251  tgagtcccaa ccaagatgat tggacattta gaaggctaga aggctttatc
     301  agagccagaa tgctggtaga actacttgaa acaaagaacg aaaaggaaaa
     351  acagaaaatg tatgaaaaaa tctgcgggct tcctctggtg agtgcatatg
     401  gtttgaaacc tagcgacaag tttgatgcaa ccacagccag gatcatgcta
     451  acactaggcg gtcctctcac cttactggca agtcttgaca gctttgctgc
     501  agctgctctt ccgttagctt attttcagaa tgtgaaaaag gaagcactcg
     551  gtataagcag attctcaact tatgagcagc tttgcaaagt tgcaagagtc
     601  atggcagcaa aggaattcaa gtttactgac agatacaaga agatctttga
     651  tgaaactgta aagatcctga ctaaatgcac tcctggaact tcaggtgcag
     701  cttcattggt caagttcaat gaacagattc aaattcttga aggtgctttc
     751  ggtaagattg ttgaagacat tggtgagtct tctaaaccca agaatccctc
     801  caagaatgac aggtactaat ag