Sequence of DPV Garlic common latent virus

Garlic common latent virus isolate Raug coat protein gene, complete cds.

ACC No: JQ818256

Dated: 2013-06-11 | Length: 960 | CRC: 968907963

                
ID   JQ818256; SV 1; linear; genomic RNA; STD; VRL; 960 BP.
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AC   JQ818256;
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DT   02-APR-2013 (Rel. 116, Created)
DT   11-JUN-2013 (Rel. 117, Last updated, Version 2)
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DE   Garlic common latent virus isolate Raug coat protein gene, complete cds.
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KW   .
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OS   Garlic common latent virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC   Betaflexiviridae; Carlavirus.
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RN   [1]
RC   Publication Status: Available-Online prior to print
RP   1-960
RX   PUBMED; 23553322.
RA   Pramesh D., Baranwal V.K.;
RT   "Molecular characterization of coat protein gene of Garlic common latent
RT   virus isolates from India: an evidence for distinct phylogeny and
RT   recombination";
RL   Virus Genes 0:0-0(2013).
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RN   [2]
RP   1-960
RA   Pramesh D., Baranwal V.K.;
RT   ;
RL   Submitted (06-MAR-2012) to the INSDC.
RL   Division of Plant Pathology, Indian Agricultural Research Institute, Pusa,
RL   New Delhi, Delhi 110012, India
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FH   Key             Location/Qualifiers
FH
FT   source          1. .960
FT                   /organism="Garlic common latent virus"
FT                   /host="garlic"
FT                   /isolate="Raug"
FT                   /mol_type="genomic RNA"
FT                   /country="India"
FT                   /isolation_source="garlic cloves"
FT                   /collected_by="Pramesh D"
FT                   /collection_date="02-Nov-2010"
FT                   /db_xref="taxon:47900"
FT   CDS             1. .960
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:M4H4T5"
FT                   /db_xref="UniProtKB/TrEMBL:M4H4T5"
FT                   /protein_id="AFO83502.1"
FT                   /translation="MSTSETEEQRSRRLALERSDAERRKNDAAVRARQDAAIDSEEPAD
FT                   MQETSVNDVDLRQMENRVQEAKRFLERFNKLKKFQADNMTAGEIKNGGFETGRPKLNIA
FT                   ANLRGDTANVFTRPSMDALIALDFKAESLAVATAEDLAAITAKFEQLGVPTERLAPLCW
FT                   SIARYCADTSSSYVADPKGTFEYPGGAITRDAVYAVIKEVTTLRAFCRAFAPVVWNEML
FT                   IAKRPPAGWQTKGYTASTKYAAFDTFDYVLNSACVQPLEGIIRVPTDEETIAHMTNKRI
FT                   AIDRNRRNGRFSSTSSLVTGGMFGKDIKTNFHGSNNAD"
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SQ   Sequence 960 BP; 280 A; 194 C; 258 G; 228 T; 0 other;

jq818256 Length: 960  11-JUN-2013  Type: N  Check: 3707  ..

       1  atgtcaacga gtgaaacaga ggaacagaga tcacgaagac tggctttaga
      51  gagaagcgat gctgaacgcc ggaaaaatga tgcagcagtg agagctaggc
     101  aggacgctgc tatcgattct gaggaacctg ctgacatgca agagacgagc
     151  gttaatgatg ttgatctgcg tcaaatggaa aatagggtcc aggaagctaa
     201  gcggtttttg gagcgcttca acaagcttaa gaagttccaa gcagacaaca
     251  tgacagcagg tgagatcaag aatggagggt ttgaaactgg gaggccaaaa
     301  ctgaacattg cggccaattt gcgcggcgac actgctaatg tgtttacaag
     351  gcctagcatg gatgctttaa tagcattgga cttcaaagct gaatccttgg
     401  cagttgcgac tgcagaagac ctagctgcta tcaccgctaa atttgaacag
     451  cttggggtgc caactgagag attggctcca ctttgttggt caattgcaag
     501  gtattgcgca gatacgagtt cttcatatgt ggctgacccg aaaggaactt
     551  ttgaataccc agggggtgcc ataacaaggg acgctgttta tgctgtcatc
     601  aaagaagtta cgaccctgag ggctttctgc agagctttcg caccagtggt
     651  ttggaatgag atgttaatcg ctaaaagacc tcctgctggt tggcaaacca
     701  aaggttacac tgctagtaca aagtatgctg cctttgatac tttcgattac
     751  gtgcttaatt ctgcttgcgt ccagccactt gaggggatca tacgggtgcc
     801  aactgatgag gagaccatag ctcacatgac caacaagcgg attgctattg
     851  ataggaatag gcgcaatggt cggttttcaa gcacaagcag tttagttact
     901  gggggcatgt tcggtaaaga tatcaaaaca aacttccatg gatccaacaa
     951  tgcagactag