Sequence of DPV Soybean mild mottle pararetrovirus
Soybean mild mottle pararetrovirus, complete genome.
ACC No: JQ926983
Dated: 2012-08-21 | Length: 7757 | CRC: 216278305
ID JQ926983; SV 1; circular; genomic DNA; STD; VRL; 7757 BP.
XX
AC JQ926983;
XX
DT 21-AUG-2012 (Rel. 113, Created)
DT 21-AUG-2012 (Rel. 113, Last updated, Version 1)
XX
DE Soybean mild mottle pararetrovirus, complete genome.
XX
KW .
XX
OS Soybean mild mottle pararetrovirus
OC Viruses; Retro-transcribing viruses; Caulimoviridae; Caulimovirus.
XX
RN [1]
RP 1-7757
RX PUBMED; 22879623.
RA Han J., Domier L.L., Dorrance A., Qu F.;
RT "Complete genome sequence of a novel pararetrovirus isolated from soybean";
RL J. Virol. 86(17):9555-9555(2012).
XX
RN [2]
RP 1-7757
RA Han J., Domier L.L., Dorrance A., Qu F.;
RT ;
RL Submitted (11-APR-2012) to the INSDC.
RL Department of Plant Pathology, The Ohio State University, 024 Selby Hall,
RL 1680 Madison Ave., Wooster, OH 44691, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .7757
FT /organism="Soybean mild mottle pararetrovirus"
FT /host="soybean"
FT /mol_type="genomic DNA"
FT /country="USA"
FT /collection_date="Aug-2011"
FT /db_xref="taxon:1221449"
FT CDS 605. .1552
FT /codon_start=1
FT /product="movement protein"
FT /protein_id="AFP95346.1"
FT /translation="MNTVSVDHDSGSEEQAQITFNESSKGFDASLLIKQSVLSRINKTN
FT LSLNKNDVFKIPSLGFLKRKNEVYYYVSTKEIHVDIKDTKGTVYLPFITKEEVNTNLQK
FT IKSEVRSKISTVHLGAIKVLIKASFQAGIDSPIKMAIIDNRINDRKDCILGAARGNLCY
FT QKFMFTVYPKFEISINTKNLDQVLSFIHHFERENLMNSGDKVFSLTYVVGYALSNSVHS
FT IDYKHKEYIEIDQVFSDIGHVEEKQFSDISPIEDTWALDIAQNKGRLGQGPIRSIRGNT
FT MHIGSTSRPKDISLVDISKQIDEFGKTLKTLSET"
FT CDS 1554. .2078
FT /codon_start=1
FT /product="aphid transmission factor"
FT /protein_id="AFP95347.1"
FT /translation="MVPPNTNEATQMPHIYKKGRILKFKKLNEGIDRTNRKYLFSSHGS
FT GIQTVVNHCNNLNQVVARNFLQLAKLLSYFGLSKDPSEDYSKDPSVFKRFFKDLPSTSF
FT KKGGDKKDKNEILEKLTSLIEKQGTKLRDLESKIDNFVKNDASKDDIKDLRIDVRRRLD
FT SIDESLKKIIG"
FT CDS 2075. .2416
FT /codon_start=1
FT /product="DNA-binding protein"
FT /protein_id="AFP95348.1"
FT /translation="MSLAEIQKAIDQVKRLAEQIEKLLESSKTIVEASSAKVIQDITSK
FT LEECHCNKEILDALKSHDSKEKPETQIVNSDKSPSTSSLQKYSFPNEYVGNAELGSSGN
FT PNAIVFPRR"
FT CDS 2413. .3909
FT /codon_start=1
FT /product="capsid protein"
FT /protein_id="AFP95349.1"
FT /translation="MTNYYRNVEEFFWNNWEDDDLKVNDDNFALLEQAITLMELNDEVR
FT ANQIIEQSDYLRSAFGPKQESILIIEEQSEPSDWESDIGSFNSETTNDFVQRNTQPRFR
FT MNPNSEVKTELDDIPESSRDGATRNKRPRNIFNEPPKPNHGAFGIFTLNLDCNKDRKRD
FT ISVWLNEISLLIQTQPEAFDTPEKVILLAEHKSSGNLNRYLKNVSWRTQGITPVNTLNI
FT IAQAVYLAFLGLDYVEDGKKEAKDIKNKAEERMTKMTLCDICYLETFYCDYEKAFYELQ
FT EVDETLKYVQLYLRKIPIVGEIARTRYEAESNSYTKQSLAYAHRLVKEEITKICSLSKT
FT QKKLKKFNKSCCPKLVDDLTLDYGCKVKSKRKVFKYEKKRSSKHKRFQKRYVKKSFKPS
FT KFARKPSKNPSKEKFCPKGKKNCRCWICSEEGHYANECPNKENNKKQFKMFQEVLSQGL
FT VPIEEPYEHEHHVFEFFEEPPDSDGTTEYSSSESSGSDSE"
FT CDS 3806. .5905
FT /codon_start=1
FT /product="reverse transcriptase"
FT /protein_id="AFP95350.1"
FT /translation="MNMNTMFLSSLKNPQIQMEQLSIHLQNHQVQIQNNSEMNYLNSTN
FT PNSIYVKGILKFSGYKQLELHCFVDTGASMCVASKHVIPEEHWENSSRHISVKTANGLV
FT TLTKVCKNVKIMLAGELFHIPTIYQQEVEIDLILGNNILQLHEPFVQFTDRIIIHKDGE
FT PVTIGKVFKAYYHGKPGYLESMKKNSKKPVPSPLNITPVKIEEQETLRLQLLRRGREIV
FT TQKLFSIQQDHLSKIHNLLDRVCSENPIDPEKSKRWMTASIKLKDPNTIVKVKPMQYNP
FT DDRMEFSKQIKELLDLKIIIPSKSPHQSPAFLVENEAERRRGKKRMVVNYKKINEATIG
FT DSHNLPNKDELLTLIRGKTIYSSFDCKSGFWQVFLDQESQLLTAFTCPSGHYQWRVVPF
FT GLKQAPSIFQRHMQNAFRSFEKFCCVYVDDILVFSDNEQDHHRHVMALLQRCNQLGIIL
FT SKKKAQLFQEKINFLGLEIDQGSHKPQNHILEHIHKFPDKIEDKKQLQRFLGILTYASD
FT YIPKLAEIRKPLQSKLKKDVPWTWTHDDINYMSKIKKNLKSFPTLYHPKLTDTLIIETD
FT ASGSFWGGILKARTENSDSELICRYTSGSFKAAELNYHSNEKEILAVMNTIKKFTGYLT
FT PVKFLIRTDNKNFTHFLKINLKGDYKQGRLVRWQMWFSRYVFEVEHLSGDKNVFADFLT
FT REFHY"
FT CDS 6017. .7621
FT /codon_start=1
FT /product="transcriptional transactivator"
FT /protein_id="AFP95351.1"
FT /translation="MESSESLKLKIAIMEQELKLMKMRLEYNLLVEQKSSITLDSQSPN
FT EQAGILPKNTIVSSSTQQKDKTIPSTNAGKQIVSSPEQTATGKDKSNPLTAEALPKSLN
FT QTQSSRLISETVNLRPNQGLKIERIQDDEFQTPKPNTKTQHYYYVVFNGANAGIYEDWE
FT TAKTAVNGVPNVKHKKYRSLLEATTAAKLFAKDNFCAEAKLINSSDCLKPNTFCEALKQ
FT GKKTKVSLGRPVQQSTVQKSSNDQDQEEPLCARGFEYWYLEGRRASESKLIEERFFTTD
FT NANVSYFNFLKNSHPDQVYEAFRYGLVRMIYPSNNLQELKSFPKGFVSAIKKFRIKTSK
FT DSGKTDRDVFVKVLSSIPAFDESGVMLHEPHHVIQIGFSKGEKYSPSKVMPSRVEKKDF
FT PELAKAKFSNLLDKVYDFQDEDRIFVNYTDSRILLFSKGSKPIGKEDIRCILQFQQQVT
FT RQDIFKMHFEDICSMIKDKVGPAHCCPLCKATDAIKRSLMVGPTITTSTSSTRDESFKV
FT DGPVFLPAGPIDFLEEE"
XX
SQ Sequence 7757 BP; 2761 A; 1432 C; 1403 G; 2161 T; 0 other;
jq926983 Length: 7757 21-AUG-2012 Type: N Check: 3309 ..
1 tatataagga agttcaattc atttgtttag gacatcgaac acacacatcg
51 aattcacaca tcgaatgctc acctcccact ctctctctct aaaatttgta
101 tctctctagc catgagcgag taaaacccat tcttggggat gaaagcctag
151 acctctgtaa tatgtttgta agcaataaaa tatagttttg gtatcccctc
201 ttctatcatg tattctctta tgtcttatca acaattgttc tgaatagcgc
251 accgtctgat accgaagaag taccgccgag gcaggaggcc gttagggaag
301 aagtaggtga caaagcgttg agcagattga gaacgacaac agagatacag
351 tgtaagtcga aggtacagat acaaaacgta tatttgagct tataaactag
401 atattacatg ttaaaaggat ctttcatctc taagaactca aaaaattata
451 aatttttaca atttataaac caaaaactta tgttttacaa actaatgatt
501 tttatcatat caaggattta tatccaacaa acgatagact cagttcatta
551 cttttgtcta aattaaaggt ttttaaccag tatccgcaat ttggtatcag
601 agccatgaat acagtttctg tagaccatga ctcaggttct gaagaacaag
651 cacaaatcac tttcaatgaa agttctaagg gatttgatgc cagtttgtta
701 atcaaacaat ctgttttatc taggattaat aaaactaatc ttagcttaaa
751 caaaaatgat gttttcaaaa tacctagctt aggctttttg aaacgcaaaa
801 acgaagtata ctattatgtt agcacgaaag agattcatgt tgacataaag
851 gatacaaaag gtactgtcta cttacccttt attactaaag aggaagtaaa
901 cactaaccta caaaagatta aatctgaagt tagatctaaa atctcaactg
951 ttcatcttgg agcaattaag gttttaatta aagcttcatt tcaagcaggt
1001 atcgatagtc caattaaaat ggcaattatc gataacagaa ttaatgatcg
1051 aaaagattgc atcctaggtg ctgctagagg caatctttgc tatcagaaat
1101 tcatgtttac tgtttatccc aagtttgaga taagcataaa caccaagaac
1151 ttagatcaag ttctatcctt cattcatcat tttgaacgtg aaaatttgat
1201 gaattctgga gataaagtct tctcattaac ttatgttgtg ggatacgctt
1251 tgagcaatag tgtccattct attgactaca aacacaaaga atacattgag
1301 atagatcaag tattctctga catcggccat gtagaagaga agcaattctc
1351 tgatatatca ccaatagagg acacctgggc tctcgacata gcccaaaaca
1401 aaggacgatt aggccaaggc ccaattagat ccataagagg aaataccatg
1451 catattggta gtacctctag gccaaaagat atatcccttg tagatatatc
1501 aaaacaaatt gatgaatttg gtaaaacctt aaagactctt tcagagactt
1551 aaaatggttc caccaaatac caatgaggcc acccagatgc ctcacatcta
1601 caaaaagggt agaatcctta agtttaagaa attaaatgaa gggatagaca
1651 gaacaaatag gaaataccta tttagttccc atggttcagg gattcaaaca
1701 gtggttaacc attgtaacaa tctcaaccaa gtggttgcaa gaaatttctt
1751 gcaattagca aaattattga gttattttgg actcagtaaa gatcctagtg
1801 aagattattc taaagacccc agtgtcttta aaagattctt caaagactta
1851 ccatccactt cttttaagaa ggggggagat aagaaggata aaaacgaaat
1901 tctcgaaaaa ctcacgagtt taatagagaa acaaggaact aagttaagag
1951 acttagaatc caaaattgac aattttgtca aaaacgatgc atctaaagat
2001 gacatcaaag acctaagaat agatgttaga agacgcctag attccataga
2051 cgaaagtctt aagaagatta taggatgagt ctagcagaga ttcaaaaggc
2101 cattgaccag gtcaaaagat tggctgaaca aatagaaaaa ctacttgaaa
2151 gtagcaaaac tattgttgaa gcctcttctg caaaggtcat acaagatatt
2201 acttctaaat tagaagaatg tcattgtaac aaagagattc tggatgctct
2251 taagagtcac gactcaaaag aaaaaccaga gactcaaatt gtcaatagtg
2301 ataagagccc tagtacctct tcacttcaga aatacagctt tccaaatgag
2351 tatgttggaa atgcagaatt aggttcatct ggaaatccaa acgccattgt
2401 ttttccaaga agatgacaaa ctactacagg aacgtcgaag aattcttctg
2451 gaacaactgg gaagacgacg accttaaggt taatgatgat aactttgccc
2501 ttctcgagca agctatcaca ttaatggaac taaatgatga ggttcgtgca
2551 aaccaaatca tagaacaaag tgattacctt agatccgcgt ttggccccaa
2601 acaagaatct attttaatca tagaagaaca atctgaaccc tctgactggg
2651 aatcagacat tggaagtttc aactcagaaa caactaatga ttttgttcag
2701 agaaacaccc aacctagatt taggatgaat ccaaattcag aagtcaaaac
2751 tgaattagat gatattccag aatcatccag ggatggtgca acaaggaata
2801 aaaggcctag gaatatcttt aatgaacctc ctaaacctaa ccacggtgct
2851 tttggtatct ttactctcaa tcttgattgt aataaagatc gaaaaagaga
2901 catatcagtc tggcttaatg agattagtct ccttattcag actcaaccag
2951 aggcttttga cacaccagag aaagttatac ttctcgctga gcacaagtct
3001 agtggtaatc ttaatagata cttgaagaat gtatcttgga gaacacaagg
3051 gatcacgcct gttaataccc ttaatatcat cgcacaagcg gtttatttgg
3101 cttttcttgg tctagactat gtcgaagatg gaaagaaaga agccaaagat
3151 attaaaaaca aggctgaaga gagaatgaca aaaatgacac tttgtgatat
3201 ttgttatctc gaaaccttct actgtgacta cgagaaagcc ttctacgagt
3251 tacaagaggt agacgaaacc cttaagtacg ttcaactgta ccttaggaaa
3301 attcccattg ttggtgaaat agcaaggact agatacgaag ctgagagcaa
3351 ttcttacact aagcagagtc tagcctatgc acatagattg gtcaaagaag
3401 agatcacgaa gatttgtagt ctctctaaga cacaaaagaa acttaagaaa
3451 ttcaataagt cttgctgtcc aaaacttgtt gatgatctta ctctagatta
3501 tggctgcaaa gtcaaatcca agagaaaagt tttcaaatat gagaagaaaa
3551 gatcttctaa gcacaaacgt ttccaaaaac gttatgtaaa gaaatctttt
3601 aaaccaagta aatttgctag gaaaccctct aagaatccta gtaaagagaa
3651 attctgcccc aagggtaaga aaaattgtag atgttggatc tgcagcgaag
3701 aaggtcacta tgccaatgag tgcccaaaca aagagaacaa caagaaacaa
3751 ttcaaaatgt ttcaagaagt tctatctcaa ggcttagtac ctattgagga
3801 accttatgaa catgaacacc atgtttttga gttctttgaa gaacccccag
3851 attcagatgg aacaactgag tattcatctt cagaatcatc aggttcagat
3901 tcagaataat tctgagatga attatctgaa ttctactaat cctaattcga
3951 tttatgtcaa gggaattctc aaattctctg ggtataaaca attggaactt
4001 cattgttttg tcgacacagg tgcaagtatg tgtgttgcaa gcaaacacgt
4051 aattccagaa gagcactggg aaaacagttc tagacacatc tctgtcaaaa
4101 ctgctaacgg tttggtaacc ctcacaaagg tttgcaaaaa cgttaaaata
4151 atgcttgcag gagaattatt tcatattcct actatttacc agcaggaagt
4201 tgaaatagat ctcatccttg gtaataatat cttacaattg catgagcctt
4251 ttgtgcaatt cacagataga attatcattc acaaagatgg tgaaccagtt
4301 accattggta aagtcttcaa ggcttattat catggtaaac caggttattt
4351 agaatctatg aaaaagaatt ctaaaaaacc agtaccatca ccactaaata
4401 ttactccggt aaaaattgaa gaacaagaga cacttagact tcaactttta
4451 aggaggggga gggaaatagt aactcaaaaa ctattttcaa tccaacagga
4501 tcatctaagt aaaattcata atttactaga tagagtttgt tcagaaaatc
4551 ctattgaccc tgaaaagtca aaacgatgga tgactgcatc aatcaaactc
4601 aaagatccaa atacaattgt taaagttaaa cctatgcagt ataatcctga
4651 tgaccgcatg gagtttagca aacaaattaa ggaattactt gatcttaaga
4701 tcattattcc aagcaagtca ccacaccagt ctcctgcatt cttagtcgag
4751 aatgaagctg agagacgaag aggtaagaaa cgaatggttg ttaattataa
4801 gaaaattaat gaagcaacca tcggtgatag tcacaatctt cctaataagg
4851 atgagcttct cactcttatt agaggaaaga caatatacag ttcttttgac
4901 tgtaagtcag gtttctggca agtctttcta gatcaagagt cacaactctt
4951 aactgcgttt acatgtccct cgggtcatta ccagtggaga gttgtcccct
5001 ttggtttgaa acaagcaccc tcaatctttc aaagacatat gcaaaatgct
5051 tttagaagct ttgaaaagtt ttgttgcgtt tacgttgatg acattcttgt
5101 ctttagcgac aacgaacaag atcatcacag gcacgttatg gctttgctac
5151 aacgatgcaa tcaacttggt ataatacttt ctaagaagaa agcacaatta
5201 ttccaagaaa agatcaattt tctaggttta gaaatagatc aagggtctca
5251 taaaccccag aatcatatcc tggaacacat tcataagttt ccagataaga
5301 ttgaagataa aaagcaactt caaagatttc ttggaatctt gacttatgct
5351 tcagattaca ttcctaaact tgctgaaata aggaagccct tacaaagcaa
5401 gcttaagaaa gatgtccctt ggacatggac tcatgatgat ataaattaca
5451 tgagcaagat taaaaagaat ttgaaaagtt ttccaactct ttatcaccct
5501 aaattaacag atacattaat catcgagact gatgcttctg gtagtttctg
5551 gggtggaatt cttaaagcaa gaacagaaaa ttcagattct gaattaatat
5601 gtagatatac atctggttca ttcaaagcag ctgaattaaa ctatcattcc
5651 aatgaaaagg aaattctggc tgttatgaat acaattaaga aatttactgg
5701 ttatcttaca cctgtaaaat tcttaatacg aacagataat aagaatttta
5751 cccattttct taaaattaac cttaaaggtg attataagca gggtagatta
5801 gtaagatggc aaatgtggtt ttcaagatat gtttttgaag tcgaacattt
5851 gtcaggagac aaaaatgtat ttgcagattt tctaacccgt gaatttcatt
5901 attgatttca ggtctgcact tactaaaggg ttatcccaac taagaacctt
5951 aaccggttca atagagagtt acactctcag ggacgatttg tcctctcttt
6001 tgcaggaaca atagccatgg agtcctctga aagcttaaag cttaagatag
6051 ctatcatgga acaagaactc aagctcatga aaatgagact agagtacaac
6101 ctattggttg aacaaaagag tagcatcact cttgactcac agtcaccaaa
6151 tgagcaggct ggtattttgc ctaaaaatac aatagtgtct tcatcgacac
6201 aacaaaagga taaaactatt ccttctacca atgctggtaa acaaatagtt
6251 tctagtccgg agcaaacggc taccggtaaa gacaagtcaa atccgttgac
6301 ggctgaggct ttgcccaaaa gcttaaacca gactcaatcc tcacgattga
6351 tttctgaaac ggtcaacctt agaccaaacc aaggattaaa gattgaaagg
6401 attcaagatg atgaatttca aacccctaag ccaaacacta aaacccagca
6451 ttactattat gttgttttta atggtgctaa tgcaggtatt tacgaagact
6501 gggagacagc taaaactgcg gttaatggtg tccccaacgt caagcacaag
6551 aagtatcgat cacttcttga ggccactaca gcagctaagc tttttgctaa
6601 ggataatttc tgtgcagaag ctaagttaat caacagttct gattgcttga
6651 agcctaacac attctgtgaa gcactcaagc aaggcaagaa gaccaaggtg
6701 tcacttggaa gaccagtaca acagtctact gttcaaaaat cttccaatga
6751 tcaagatcaa gaagaaccat tatgtgctcg tggattcgag tactggtatc
6801 tagaaggcag aagagcctcc gaatcaaagt tgattgaaga aagattcttc
6851 acaacagata atgcaaacgt tagttatttc aactttctca agaattctca
6901 tcccgatcag gtgtatgaag cattcagata tgggttagtt cgaatgatct
6951 atccgagcaa caacttgcaa gaattaaaat ccttcccaaa gggttttgtt
7001 agtgctatca agaagttcag aatcaagact agcaaagatt ctggtaaaac
7051 ggacagagac gtgttcgtta aggttctaag ttctatacca gcttttgacg
7101 aatctggtgt tatgttacat gaacctcacc acgtgatcca gataggattc
7151 tcgaaaggtg aaaaatacag cccttctaag gttatgcctt ccagggttga
7201 aaagaaagat ttccctgaac tagccaaggc caagtttagc aatcttttag
7251 acaaagtcta tgatttccaa gacgaagatc gtattttcgt aaattatacg
7301 gattctcgaa tactactctt ctcaaaggga tcaaaaccaa ttggaaaaga
7351 agatatacga tgtatactac aattccaaca acaggtcaca agacaggata
7401 tcttcaagat gcattttgaa gatatttgtt ctatgattaa agacaaggta
7451 ggacccgcac actgctgtcc actttgtaaa gcaacggacg ccattaaaag
7501 gagcttaatg gtaggcccca cgataacgac atccaccagc tccactcgcg
7551 acgaatcttt taaagttgat ggtcccgtct ttttaccagc cggccccatt
7601 gatttcttgg aagaggagta aaggcgcact aaggaaaaga taaaggagat
7651 tcgttctact tttcttttcg tccactcaaa tttcaataat gtaaaagtta
7701 gtgacatttg acgtcaggga tgacgcacaa tcccacttat ccagatcctt
7751 ccttgcc