Sequence of DPV Southern rice black-streaked dwarf virus

Southern rice black-streaked dwarf virus isolate JXnch10 capsid protein gene, complete cds.

ACC No: JQ927009

Dated: 2012-07-03 | Length: 1785 | CRC: 935190711

                
ID   JQ927009; SV 1; linear; genomic RNA; STD; VRL; 1785 BP.
XX
AC   JQ927009;
XX
DT   03-JUL-2012 (Rel. 113, Created)
DT   03-JUL-2012 (Rel. 113, Last updated, Version 1)
XX
DE   Southern rice black-streaked dwarf virus isolate JXnch10 capsid protein
DE   gene, complete cds.
XX
KW   .
XX
OS   Southern rice black-streaked dwarf virus
OC   Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Fijivirus;
OC   unclassified Fijivirus.
XX
RN   [1]
RP   1-1785
RA   Sun X., Zhu C.;
RT   "Detection of Southern rice black streaked dwarf virus (SRBSDV) in rice in
RT   Jiangxi Province";
RL   Unpublished.
XX
RN   [2]
RP   1-1785
RA   Sun X., Zhu C.;
RT   ;
RL   Submitted (11-APR-2012) to the INSDC.
RL   Education Key Laboratory of Crop Physiology, Ecology, Genetics, and
RL   Breeding, College of Agriculture, Jiangxi Agricultural University, Zhimin
RL   Road, Nanchang, Jiangxi 330045, China
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1785
FT                   /organism="Southern rice black-streaked dwarf virus"
FT                   /host="rice"
FT                   /isolate="JXnch10"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collection_date="Oct-2011"
FT                   /PCR_primers="fwd_name: s10-f, fwd_seq:
FT                   aagtttttttcctcatcca, rev_name: s10-r, rev_seq:
FT                   tttccccctagccgtcgtcact"
FT                   /db_xref="taxon:519497"
FT   CDS             22. .1695
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /note="P10"
FT                   /protein_id="AFM97295.1"
FT                   /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNNRPTITLLSHFNSLFHE
FT                   SNIVKSPHIASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNITQLKEHIQSYFRNEHQ
FT                   PIFQTLTNNNLSDEFLGVTTFGLSLFATSKLDAEQIERVQIETLTEGNVTLKPFSADGL
FT                   EVILDDSYIGIIGKISGLEVHKLLDKCCREVPAQMGILTDEVKLLIRSGKLRIDGGYDF
FT                   NCPASTTDVTHYGGYDQYSRQMFEKLNLFFNISLSIIPVSALKTIHVFEKELSALDADK
FT                   SLLEQTWSGVSSFIETWKVKTKAKDEDQDEYELTGLSALRKGVDGNSVSSPYNDKKFIE
FT                   WYSKTFAKIEKGSSLRKTEIEDKNTSGTSNITKQVKIHFPVQYFDEVKSNGHEKSVTVI
FT                   TNKGEMSLESYRKIGEILSAIWKRGKALAAPCIDYIKLGVEKAYHLAPVIMKKYNLTID
FT                   DIIHFIEIGPSYLAKLDKIDDWSLIAKLIITSVLPNIIQAVYKTDPSNNVMNSVIISRA
FT                   NNLLKADRDRLIKKATTANSPTSNSNSEHGQKIVLNKVTR"
XX
SQ   Sequence 1785 BP; 615 A; 320 C; 312 G; 538 T; 0 other;

jq927009 Length: 1785  03-JUL-2012  Type: N  Check: 3192  ..

       1  aagttttttt cctcatccat aatggctgac ataagacttg acatagcgcc
      51  cgatcttatc cataatggtg tgcctcaaag actttcagat acgataattc
     101  taaacaaccg accaacaatc acacttctgt ctcacttcaa ctctcttttt
     151  cacgaatcaa atattgttaa atcaccccac atcgcgtcat ctcaaactac
     201  agttaattta tacattcgta agcatttact gactcgactt catgatagat
     251  tacaaactgt cgaaaccagt actctaccga acattactca acttaaagaa
     301  catattcaaa gttatttccg taatgaacat caacctattt ttcaaaccct
     351  gactaacaat aatcttagtg atgaattttt aggtgtaact acttttggtt
     401  taagtttatt cgcaacttcg aagttggatg cagaacaaat agaacgagta
     451  caaattgaga ccctaactga aggaaacgtt acacttaaac ctttctccgc
     501  tgacggttta gaagtaattt tagatgatag ttacatcgga ataattggaa
     551  aaatttctgg tttagaagta cataaattac tcgataaatg ttgtcgtgaa
     601  gttcctgctc aaatgggaat attaactgac gaagttaaac ttttaatacg
     651  ttccggaaaa ttaagaattg acggtggata cgatttcaat tgtcctgcta
     701  gtacaacaga cgtgacacac tatggcggtt acgaccaata ttcgagacaa
     751  atgtttgaaa aattgaattt gttctttaac atcagtttga gcattattcc
     801  tgtttctgca cttaaaacta ttcatgtatt tgagaaagaa ctaagcgctt
     851  tagatgctga caaatcactt ttagaacaaa catggagcgg agtctcctca
     901  tttattgaaa catggaaagt aaaaactaaa gctaaagatg aagatcaaga
     951  tgagtacgaa ctaactggac tgtctgcact tagaaaagga gtcgatggca
    1001  attctgtatc tagcccttac aatgataaga aattcatcga atggtattct
    1051  aagacgtttg ctaaaataga gaaaggttca tcgttgcgta agaccgaaat
    1101  tgaagacaaa aatacatccg gcacctcaaa cataacaaag caagttaaaa
    1151  ttcattttcc tgttcagtat ttcgatgaag tcaaatctaa cggtcatgaa
    1201  aaaagtgtta ctgtaatcac taataaaggt gaaatgtcat tggaatctta
    1251  ccgaaagata ggtgaaatat taagtgcgat ctggaaacgt ggcaaggcat
    1301  tagctgctcc ctgcatcgat tacatcaaac ttggcgtcga aaaagcttat
    1351  catttagctc ctgtaatcat gaagaaatat aatttaacta ttgatgatat
    1401  aattcatttt attgaaattg gtccttcata cttagcgaaa ttggataaaa
    1451  ttgatgattg gtccttaatt gcaaaattga ttattaccag tgttttgcca
    1501  aacatcattc aagcggtgta taaaacagat cctagcaata atgttatgaa
    1551  ttcagttatt attagcagag ccaacaattt attgaaggcg gatcgcgatc
    1601  gtttaattaa gaaagctacc actgcaaatt cacctaccag taattcaaat
    1651  tcagaacatg gtcaaaagat tgtgttaaat aaagtcacca gatgataatt
    1701  gaggtttcat cattagcgcg actagttcag tgctgtgtgg tcttcagttc
    1751  attatcgacg ccgagtgacg acggctaggg ggaaa