Sequence of DPV Paspalum dilatatum striate mosaic virus
Paspalum dilatatum striate mosaic virus isolate AU-QG45-2011, complete genome.
ACC No: JQ948086
Dated: 2012-10-14 | Length: 2806 | CRC: 169840018
ID JQ948086; SV 1; circular; genomic DNA; STD; VRL; 2806 BP.
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AC JQ948086;
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DT 26-AUG-2012 (Rel. 113, Created)
DT 14-OCT-2012 (Rel. 114, Last updated, Version 2)
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DE Paspalum dilatatum striate mosaic virus isolate AU-QG45-2011, complete
DE genome.
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KW .
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OS Paspalum dilatatum striate mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus;
OC unclassified Mastrevirus.
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RN [1]
RP 1-2806
RX PUBMED; 22841490.
RA Kraberger S., Thomas J.E., Geering A.D., Dayaram A., Stainton D.,
RA Hadfield J., Walters M., Parmenter K.S., van Brunschot S., Collings D.A.,
RA Martin D.P., Varsani A.;
RT "Australian monocot-infecting mastrevirus diversity rivals that in Africa";
RL Virus Res. 169(1):127-136(2012).
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RN [2]
RP 1-2806
RA Varsani A., Kraberger S., Stainton D., Dayaram A., Hadfield J.,
RA Thomas J.E., Geering A., van Brunschot S., Parmenter K.;
RT ;
RL Submitted (17-APR-2012) to the INSDC.
RL School of Biological Sciences, University of Canterbury, Private bag 4800,
RL Christchurch 8140, New Zealand
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CC ##Assembly-Data-START##
CC Assembly Method :: DNAMAN v. 5.2.9
CC Coverage :: 100
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2806
FT /organism="Paspalum dilatatum striate mosaic virus"
FT /host="Paspalum dilatatum"
FT /isolate="AU-QG45-2011"
FT /mol_type="genomic DNA"
FT /country="Australia"
FT /lat_lon="26.57 S 152.92 E"
FT /collection_date="2011"
FT /note="genotype: PDSMV-A2"
FT /db_xref="taxon:1196236"
FT CDS 1. .342
FT /codon_start=1
FT /product="movement protein"
FT /protein_id="AFN80659.1"
FT /translation="MAEYPQSALVVSGAIPRRSQDESFASSLKVTALSLFAAFIAACVL
FT SFIYKTCIAEFITQYRLSGLSSVTSSGFGRTVEDPPAVPRTASEVSIPVAVRSGIPPVI
FT SGPSGIPGN"
FT CDS 351. .1070
FT /codon_start=1
FT /product="capsid protein"
FT /protein_id="AFN80660.1"
FT /translation="MPSSSKRKRGSTSGTKRRKKPRTTKWTGSRSASREALQVQTFTWS
FT EDQAFNAGGRAILLSAYTRGSGENQRKSQETITYKVALNLGVSASATVLKYCCSSQPIC
FT WLVYDKTPTGITDLTPSDIFDVPSGLQNWPSTWKVKREASHRFVVKRRWPFKLECNGST
FT FQKDYTNLPVCNTQNLVSVTRFAKGLGVRTEWKDTTTAESSDIKGGALYLVIAPANGLV
FT FTARGVIKCYFKSVGNQ"
FT CDS complement(join(1278. .1682,1766. .2461))
FT /codon_start=1
FT /product="Rep"
FT /protein_id="AFN80662.1"
FT /translation="MASRVSETEGARGQVGAPPPRREEVGAPGAVEACLEVRSRNVFLT
FT YSKCHLEPSFMLERLSRLLKKWDPTYSYVAREEHKDGSYHLHCLVQCRKYIRTKSAKFF
FT DVEEFHPNVQNARVPHKVLAYIKKAPICFVEHGAFKDEAKKKKKKADAPSTKDAKMASI
FT ISQSKTREDYLGMVKKEFPFDWATRLQQFEYSAQALFPCLPPPYVDPFGMPSQAEHQVL
FT GAWLREELYSQDRSPAERRRSLYICGPTPRRKTTWARSLGCHNYWQHAVDFLHVIPTAR
FT YNVIDDIPFKFVPCWKGLVGAQRDITVNPKYGKKRLLPNGIPCIILVNEDEDWPQYMQP
FT SQAAWFEDNCVVFYMNQGFRFFETTA"
FT CDS complement(1523. .2461)
FT /codon_start=1
FT /product="RepA"
FT /protein_id="AFN80661.1"
FT /translation="MASRVSETEGARGQVGAPPPRREEVGAPGAVEACLEVRSRNVFLT
FT YSKCHLEPSFMLERLSRLLKKWDPTYSYVAREEHKDGSYHLHCLVQCRKYIRTKSAKFF
FT DVEEFHPNVQNARVPHKVLAYIKKAPICFVEHGAFKDEAKKKKKKADAPSTKDAKMASI
FT ISQSKTREDYLGMVKKEFPFDWATRLQQFEYSAQALFPCLPPPYVDPFGMPSQAEHQVL
FT GAWLREELYSVSPYAYSIHNGVTEDQAKLDLQWISELSRTEVLLNGEEASTSADQLLEE
FT RQLGQEVLDVTTTGSMPWTSSTSFPLPDTTS"
XX
SQ Sequence 2806 BP; 635 A; 718 C; 737 G; 716 T; 0 other;
jq948086 Length: 2806 14-OCT-2012 Type: N Check: 5629 ..
1 atggcggagt accctcagtc tgctttagtg gtaagtggtg cgattccacg
51 gcgaagccag gacgagagct ttgcctcgtc tttgaaggtc actgctttat
101 ctttatttgc agcatttatt gctgcttgcg tcttgtcatt catttacaag
151 acgtgcattg cggaattcat tacgcaatac cgtttatccg gtttaagcag
201 tgtaacttca tctggctttg ggcggaccgt tgaggatccg ccagctgtcc
251 cccggacagc gtctgaggtt tcaattccag ttgctgttag aagtggtatt
301 cctcctgtga tttcaggtcc ttccggaatt cccggaaatt gacgttggaa
351 atgccgtctt cctcgaagag gaagaggggg agtacctctg gtactaagcg
401 gcgtaagaag ccgcgaacca cgaagtggac tggatcccgc agcgcatcta
451 gagaggcgct gcaagtacag accttcacgt ggagtgaaga ccaggcgttc
501 aacgccggtg gccgagcgat ccttctctcg gcctatacgc gcggttctgg
551 cgagaaccag cgcaaatccc aggaaaccat tacgtacaag gttgccctca
601 accttggagt atctgcatcc gctacggttc tcaaatattg ttgcagcagc
651 cagccgatat gctggctggt gtatgacaag acgcctactg ggattactga
701 cctgaccccg tcagacatct tcgatgtgcc ctcggggtta cagaactggc
751 cttcgacctg gaaggtcaaa cgcgaagcgt ctcaccgctt tgtggtgaaa
801 cggcgttggc cgtttaagtt ggaatgtaac ggcagtacgt tccagaagga
851 ctacacgaac ctgcctgtct gcaatacgca gaacctggtg tctgtaacga
901 ggttcgccaa gggacttgga gtgcgaacgg agtggaagga cacaacgacg
951 gcggagtcgt cggacatcaa gggcggagcc ctgtaccttg tgatagcccc
1001 tgctaacggg cttgtgttca cagcccgtgg tgtaatcaag tgctacttta
1051 agtctgtggg aaatcagtag cccactgtaa ttgagcccat tgggctatct
1101 atgatctgaa ataaaatggc acattttatt tatcgcattg cgatgaacgc
1151 gtagcgttac aaattacaat acatagcgca gcctcgggct aaagaccgag
1201 tctgaagcga ccctagtaca ataccaccgg aaaaacaata tctatctgat
1251 aatgcctcgc gcgtaggtgt gtaacaccta cgccgtcgtt tcgaagaaac
1301 ggaacccttg gttcatgtag aagacgacgc agttgtcctc aaaccaagca
1351 gcctgtgatg gctgcatgta ttggggccag tcttcatcct cgttcacgag
1401 gattatgcaa ggtattccgt taggaagaag acgtttcttc ccgtactttg
1451 gattgacggt gatgtccctc tgtgccccaa caagcccctt ccaacaagga
1501 acgaacttga acgggatgtc atctatgacg ttgtatctgg cagtgggaat
1551 gacgtggagg aagtccacgg catgctgcca gtagttgtga catccaagac
1601 ttcttgccca agttgtcttt cttctaggag ttggtccgca gatgtagagg
1651 cttcttcgcc gttcagcagg acttctgtcc tgctcaattc agatatccat
1701 tggaggtcaa gcttggcttg atcctccgtg actccgttgt gaatggaata
1751 tgcatatgga cttacagagt ataattcttc tcggagccat gctccgagca
1801 cctgatgttc tgcctgtgaa ggcatcccga agggatcaac atacggagga
1851 gggaggcagg ggaacagcgc ttgcgctgag tattcgaact gctgcaacct
1901 tgttgcccag tcgaatggaa attctttttt gaccatccca agataatcct
1951 cacgtgtttt tgattgagaa attatagacg ccattttggc gtccttcgtg
2001 gaaggagcgt cagccttctt cttcttcttc ttcgcttcgt ccttgaaagc
2051 cccgtgctca acgaagcata tgggggcttt cttgatgtac gcaagtacct
2101 tgtgaggtac ccgcgcgttc tgcacgttag gatgaaattc ttcgacatcg
2151 aagaattttg cactcttagt gcgaatgtat tttctgcact gtactagaca
2201 gtgcaaatgg taagagccat ccttgtgctc ttcccttgcg acgtatgaat
2251 acgtcgggtc ccacttctta agaagtctgg agaggcgttc aagcatgaac
2301 gacggctcca ggtggcactt actgtatgtc aggaatacat tcctgcttct
2351 tacctccaag caagcttcga ccgcccctgg ggcgccaact tcctcccgcc
2401 tggggggggg ggcgccaact tgccccctgg cgccctctgt ctcactgaca
2451 cgtgaggcca tcttgtaaga agctatcgtg gatagcttcg cagccgtagg
2501 atatgctttg agatccgagg ttttgaaaaa ctttcgtttc aaccgtcgcc
2551 ccttgccccc ttccgctgct gaagggcctg ttaaataggc cgcagcggag
2601 atggctttaa tttgggccgg ccccgccgaa aagtagggcg acgagataat
2651 attaccgtcg ccctgctttg cgagggccca tgctcaacgg gcccgagcgg
2701 tcccggccca tccactaagg attgctcccc gcattacgat aaatggatct
2751 gactgccgct ttactttgaa cgatgtctat aaaagactgc atcgcactac
2801 gacgcc