Sequence of DPV Potato virus Y

Potato virus Y strain CAA82*1982 isolate CAA82 capsid protein gene, partial cds.

ACC No: JQ954315

Dated: 2012-08-05 | Length: 801 | CRC: -222213598

                
ID   JQ954315; SV 1; linear; genomic RNA; STD; VRL; 801 BP.
XX
AC   JQ954315;
XX
DT   05-AUG-2012 (Rel. 113, Created)
DT   05-AUG-2012 (Rel. 113, Last updated, Version 1)
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DE   Potato virus Y strain CAA82*1982 isolate CAA82 capsid protein gene, partial
DE   cds.
XX
KW   .
XX
OS   Potato virus Y
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RC   Publication Status: Available-Online prior to print
RP   1-801
RX   PUBMED; 22837421.
RA   Cuevas J., Delaunay A., Rupar M., Jacquot E., Elena S.F.;
RT   "Molecular evolution and phylogeography of Potato virus Y based on the CP
RT   gene";
RL   J. Gen. Virol. 0:0-0(2012).
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RN   [2]
RP   1-801
RA   Delaunay A., Jacquot E.;
RT   ;
RL   Submitted (19-APR-2012) to the INSDC.
RL   UMR INRA-CIRAD-Montpellier SupAgro BGPI, INRA, Cirad TA A-54K, Campus
RL   international de Baillarguet, Montpellier cedex 5 34398, France
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FH   Key             Location/Qualifiers
FH
FT   source          1. .801
FT                   /organism="Potato virus Y"
FT                   /host="Capsicum annuum"
FT                   /strain="CAA82*1982"
FT                   /isolate="CAA82"
FT                   /mol_type="genomic RNA"
FT                   /country="Israel"
FT                   /collected_by="Benoit Moury"
FT                   /collection_date="1982"
FT                   /db_xref="taxon:12216"
FT   CDS             <1. .>801
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /note="coat protein"
FT                   /protein_id="AFO84340.1"
FT                   /translation="ANDTIDAGGSNKKDAKPEQGSIQPNPSKGKDKDVNVGTSGTHTVP
FT                   RIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVRVAYDIG
FT                   ETEMPTVMNGLMVWCIENGTSPNVNGVWVMMDRDEQVEYPLKPIVENAKPTLRQIMAHF
FT                   SDVAEAYIEMRNKKEPYMPRYGLIRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKA
FT                   AALKSAQSRLFGLDGGVSTQEENTERHTTEDVSPSMHTLLGVKNM"
XX
SQ   Sequence 801 BP; 273 A; 157 C; 200 G; 171 T; 0 other;

jq954315 Length: 801  05-AUG-2012  Type: N  Check: 3575  ..

       1  gcaaatgata caattgatgc aggagggagc aataagaaag atgcgaaacc
      51  agaacagggt agcatccagc cgaatcctag caaaggaaag gataaggacg
     101  tgaatgttgg tacatctgga acacatactg taccaagaat aaaggctatt
     151  acgtccaaaa tgagaatgcc taaaagcaag ggagcgaccg tgctaaactt
     201  agaacacctg cttgaatatg ctccacagca aattgatatt tcaaatactc
     251  gggcaactca atcacagttt gatacgtggt atgaagcagt gcgggtggca
     301  tacgacatag gagaaactga aatgccaact gtgatgaatg ggcttatggt
     351  ttggtgcatt gaaaatggaa cctcgccaaa tgtgaacgga gtttgggtaa
     401  tgatggatag agatgaacaa gtcgaatacc cattgaaacc aatcgtcgag
     451  aatgcaaaac caacccttag gcaaatcatg gcacatttct cagatgttgc
     501  agaagcgtat atagaaatgc gcaacaaaaa ggaaccatat atgccacgat
     551  atggtttaat tcgaaatctg cgggatggaa gtctagcgcg ttatgccttt
     601  gacttttatg aagtcacttc acgaacacca gtgagggcta gggaagcgca
     651  catacaaatg aaagccgcag cattgaaatc agcccaatct cgacttttcg
     701  ggttggacgg tggcgtcagt acacaagagg agaacacaga gaggcacacc
     751  accgaggatg tttctccgag tatgcatact ctacttgggg tcaagaacat
     801  g