Sequence of DPV Potato virus Y

Potato virus Y strain CAA141*1999 isolate CAA141 capsid protein gene, partial cds.

ACC No: JQ954317

Dated: 2012-08-05 | Length: 801 | CRC: 825812050

                
ID   JQ954317; SV 1; linear; genomic RNA; STD; VRL; 801 BP.
XX
AC   JQ954317;
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DT   05-AUG-2012 (Rel. 113, Created)
DT   05-AUG-2012 (Rel. 113, Last updated, Version 1)
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DE   Potato virus Y strain CAA141*1999 isolate CAA141 capsid protein gene,
DE   partial cds.
XX
KW   .
XX
OS   Potato virus Y
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RC   Publication Status: Available-Online prior to print
RP   1-801
RX   PUBMED; 22837421.
RA   Cuevas J., Delaunay A., Rupar M., Jacquot E., Elena S.F.;
RT   "Molecular evolution and phylogeography of Potato virus Y based on the CP
RT   gene";
RL   J. Gen. Virol. 0:0-0(2012).
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RN   [2]
RP   1-801
RA   Delaunay A., Jacquot E.;
RT   ;
RL   Submitted (19-APR-2012) to the INSDC.
RL   UMR INRA-CIRAD-Montpellier SupAgro BGPI, INRA, Cirad TA A-54K, Campus
RL   international de Baillarguet, Montpellier cedex 5 34398, France
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FH   Key             Location/Qualifiers
FH
FT   source          1. .801
FT                   /organism="Potato virus Y"
FT                   /host="Capsicum annuum"
FT                   /strain="CAA141*1999"
FT                   /isolate="CAA141"
FT                   /mol_type="genomic RNA"
FT                   /country="France"
FT                   /collected_by="Benoit Moury"
FT                   /collection_date="1999"
FT                   /db_xref="taxon:12216"
FT   CDS             <1. .>801
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /note="coat protein"
FT                   /protein_id="AFO84342.1"
FT                   /translation="ANDTIDAGENSKKDAKPEQGSIQRNPNKGKEKDVNAGTSGTHTVP
FT                   RIKAITSKMRMPKSKGTAVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVRVAYDIG
FT                   ETEMPTVMNGLMVWCIENGTSPNVNGVWVMMDGSEQVEYPLKPIVENAKPTLRQIMAHF
FT                   SDVAEAYIEMRNKKEPYMPRYGLIRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKA
FT                   AALKSAQSRLFGLDGGVSTQEENTERHTTEDVSPSMHTLLGVKNM"
XX
SQ   Sequence 801 BP; 276 A; 159 C; 198 G; 168 T; 0 other;

jq954317 Length: 801  05-AUG-2012  Type: N  Check: 2404  ..

       1  gcaaacgata caattgatgc tggagagaac agtaagaaag atgctaaacc
      51  agaacagggt agcatccagc gaaatcccaa caagggaaaa gagaaggacg
     101  tgaatgccgg tacatctgga acacatactg taccaagaat aaaggctatt
     151  acgtcaaaaa tgagaatgcc taaaagcaaa ggaacggccg tgctaaactt
     201  agaacacttg ctcgaatatg ctccacaaca gatagacatc tcgaatactc
     251  gggcaactca atcacagttt gatacgtggt atgaagcagt gcgggtggca
     301  tacgacatag gggaaactga aatgccaact gtgatgaatg ggcttatggt
     351  ttggtgcatt gaaaatggaa cctcgccaaa tgtcaacgga gtttgggtta
     401  tgatggatgg aagtgaacaa gttgaatatc cgttgaaacc aatcgttgaa
     451  aatgcaaaac cgacccttag gcaaatcatg gcacatttct cagatgttgc
     501  agaagcgtat atagaaatgc gcaacaaaaa ggaaccatac atgccacgat
     551  atggtttaat tcgaaatctg cgggatggaa gtttagcgcg ctatgccttt
     601  gacttttatg aagtcacatc acgaacacca gtgagggcta gggaagcgca
     651  catacaaatg aaggccgcag cattaaaatc agctcaatct cgacttttcg
     701  ggttggacgg tggcgtcagt acacaagagg agaacacaga gaggcacacc
     751  accgaggatg tttctccaag tatgcatact ctacttggag tcaagaacat
     801  g