Sequence of DPV Potato virus Y

Potato virus Y strain US05_7*2005 isolate 7 capsid protein gene, partial cds.

ACC No: JQ954367

Dated: 2012-08-05 | Length: 801 | CRC: -758939936

                
ID   JQ954367; SV 1; linear; genomic RNA; STD; VRL; 801 BP.
XX
AC   JQ954367;
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DT   05-AUG-2012 (Rel. 113, Created)
DT   05-AUG-2012 (Rel. 113, Last updated, Version 1)
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DE   Potato virus Y strain US05_7*2005 isolate 7 capsid protein gene, partial
DE   cds.
XX
KW   .
XX
OS   Potato virus Y
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RC   Publication Status: Available-Online prior to print
RP   1-801
RX   PUBMED; 22837421.
RA   Cuevas J., Delaunay A., Rupar M., Jacquot E., Elena S.F.;
RT   "Molecular evolution and phylogeography of Potato virus Y based on the CP
RT   gene";
RL   J. Gen. Virol. 0:0-0(2012).
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RN   [2]
RP   1-801
RA   Delaunay A., Jacquot E.;
RT   ;
RL   Submitted (19-APR-2012) to the INSDC.
RL   UMR INRA-CIRAD-Montpellier SupAgro BGPI, INRA, Cirad TA A-54K, Campus
RL   international de Baillarguet, Montpellier cedex 5 34398, France
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FH   Key             Location/Qualifiers
FH
FT   source          1. .801
FT                   /organism="Potato virus Y"
FT                   /host="Solanum tuberosum"
FT                   /strain="US05_7*2005"
FT                   /isolate="7"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collected_by="Stewart Gray"
FT                   /collection_date="2005"
FT                   /db_xref="taxon:12216"
FT   CDS             <1. .>801
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /note="coat protein"
FT                   /protein_id="AFO84392.1"
FT                   /translation="ANDTIDAGGSNKKDTKPEQSSIQSNLNKGKDKDVNAGTSGTHTVP
FT                   RIKAITSKMRMPKSKGAAVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQMAYDIG
FT                   ETEMPTVMNGLMVWCIENGTSPNVNGVWVMMDGNEQVEYPLKPIVENAKPTLRQIMAHF
FT                   SDVAEAYIEMRNKKEPYMPRYGLIRNLRDMGLARYAFDFYEVTSRTPVRAREAHIQMKA
FT                   AALKSAQPRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM"
XX
SQ   Sequence 801 BP; 271 A; 161 C; 198 G; 171 T; 0 other;

jq954367 Length: 801  05-AUG-2012  Type: N  Check: 2903  ..

       1  gcaaatgaca caattgatgc aggaggaagc aacaagaaag atacaaaacc
      51  agagcaaagc agcatccagt caaacctgaa caaaggaaaa gataaagatg
     101  tgaatgccgg cacatctggg actcatactg tgccgagaat caaggctatc
     151  acgtccaaaa tgagaatgcc caaaagcaag ggagcagccg tgctgaattt
     201  agaacatttg cttgagtatg ctccacaaca aattgatatt tcaaatactc
     251  gggcaactca atcacagttt gatacgtggt atgaggcagt gcagatggca
     301  tacgacatag gagaaactga gatgccaact gtgatgaatg ggcttatggt
     351  ctggtgcatt gaaaatggaa cctcgccaaa tgtcaacgga gtttgggtta
     401  tgatggatgg gaatgaacaa gttgagtacc cgttgaaacc aatcgttgag
     451  aatgcaaaac caacccttag gcaaatcatg gcacatttct cagatgttgc
     501  agaagcgtat atagaaatgc gcaacaaaaa ggaaccatat atgccacgat
     551  atggtttaat tcgaaatctg cgggatatgg gtttagcgcg ttatgctttt
     601  gacttttatg aggtcacatc acgaacacca gtgagggcta gggaagcgca
     651  cattcaaatg aaggccgcag cattgaaatc agcccaacct cgacttttcg
     701  ggttggacgg tggcatcagt acacaagagg agaacacaga gaggcacacc
     751  accgaggatg tctctccaag tatgcatact ctacttggag tcaagaacat
     801  g