Sequence of DPV Potato virus Y

Potato virus Y strain US05_9*2005 isolate 9 capsid protein gene, partial cds.

ACC No: JQ954368

Dated: 2012-08-05 | Length: 801 | CRC: 73120022

                
ID   JQ954368; SV 1; linear; genomic RNA; STD; VRL; 801 BP.
XX
AC   JQ954368;
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DT   05-AUG-2012 (Rel. 113, Created)
DT   05-AUG-2012 (Rel. 113, Last updated, Version 1)
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DE   Potato virus Y strain US05_9*2005 isolate 9 capsid protein gene, partial
DE   cds.
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KW   .
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OS   Potato virus Y
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RC   Publication Status: Available-Online prior to print
RP   1-801
RX   PUBMED; 22837421.
RA   Cuevas J., Delaunay A., Rupar M., Jacquot E., Elena S.F.;
RT   "Molecular evolution and phylogeography of Potato virus Y based on the CP
RT   gene";
RL   J. Gen. Virol. 0:0-0(2012).
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RN   [2]
RP   1-801
RA   Delaunay A., Jacquot E.;
RT   ;
RL   Submitted (19-APR-2012) to the INSDC.
RL   UMR INRA-CIRAD-Montpellier SupAgro BGPI, INRA, Cirad TA A-54K, Campus
RL   international de Baillarguet, Montpellier cedex 5 34398, France
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FH   Key             Location/Qualifiers
FH
FT   source          1. .801
FT                   /organism="Potato virus Y"
FT                   /host="Solanum tuberosum"
FT                   /strain="US05_9*2005"
FT                   /isolate="9"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collected_by="Stewart Gray"
FT                   /collection_date="2005"
FT                   /db_xref="taxon:12216"
FT   CDS             <1. .>801
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /note="coat protein"
FT                   /protein_id="AFO84393.1"
FT                   /translation="GNDTIDAGGSNKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHTVP
FT                   RIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIG
FT                   ETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGNEQVEYPLKPIVENAKPTLRQIMAHF
FT                   SDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKA
FT                   AALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM"
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SQ   Sequence 801 BP; 278 A; 157 C; 184 G; 182 T; 0 other;

jq954368 Length: 801  05-AUG-2012  Type: N  Check: 6812  ..

       1  ggaaatgaca caatcgatgc aggaggaagc aataagaagg atgcaaaaca
      51  agagcaaggt agcattcaac caaatctcaa caaagaaaag gagaaggacg
     101  tgaatgttgg aacatctgga actcatactg tgccacgaat taaagccatc
     151  acgtctaaaa tgagaatgcc caagagtaag ggtgcaactg tactgaactt
     201  agaacattta ctcgagtatg ctccacagca aattgacatc tcaaatactc
     251  gagcaactca atcacagttt gatacatggt atgaagcagt acagcttgct
     301  tacgacatag gagaaactga aatgccaact gtgatgaatg ggcttatggt
     351  ttggtgcatt gagaatggaa cctcgccaaa catcaacggt gtctgggtta
     401  tgatggatgg aaatgaacaa gttgaatacc cactcaagcc gattgttgaa
     451  aatgcaaaac caacccttag gcaaatcatg gcacatttct cagatgttgc
     501  agaagcgtat attgaaatgc gcaacaaaaa ggaaccatat atgccacgat
     551  atggtttagt tcgaaatctg cgtgatggaa gtttggctcg ttatgccttt
     601  gacttttatg aagttacatc acgtacacca gtaagggcta gagaggcaca
     651  cattcaaatg aaagccgcag ctctgaaatc agctcaatcc cgacttttcg
     701  gattggatgg tggcattagt acacaagagg aaaacacaga gaggcacacc
     751  accgaggatg tttctccaag tatgcatact ctacttggag tgaagaacat
     801  g