Sequence of DPV Bhanja virus
Bhanja virus strain M3811 segment L, complete sequence.
ACC No: JQ956376
Dated: 2012-07-31 | Length: 6333 | CRC: 895305403
ID JQ956376; SV 1; linear; viral cRNA; STD; VRL; 6333 BP.
XX
AC JQ956376;
XX
DT 31-JUL-2012 (Rel. 113, Created)
DT 31-JUL-2012 (Rel. 113, Last updated, Version 1)
XX
DE Bhanja virus strain M3811 segment L, complete sequence.
XX
KW .
XX
OS Bhanja virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Phlebovirus;
OC unclassified Phlebovirus.
XX
RN [1]
RC Publication Status: Available-Online prior to print
RP 1-6333
RX PUBMED; 22806684.
RA Dilcher M., Alves M.J., Finkeisen D., Hufert F., Weidmann M.;
RT "Genetic characterization of Bhanja virus and Palma virus, two tick-borne
RT phleboviruses";
RL Virus Genes 0:0-0(2012).
XX
RN [2]
RP 1-6333
RA Dilcher M., Alves M.J., Finkeisen D., Hufert F.T., Weidmann M.;
RT ;
RL Submitted (18-APR-2012) to the INSDC.
RL Department of Virology, University Medical Center Goettingen, Kreuzbergring
RL 57, Goettingen, Lower Saxony D-37075, Germany
XX
FH Key Location/Qualifiers
FH
FT source 1. .6333
FT /organism="Bhanja virus"
FT /segment="L"
FT /strain="M3811"
FT /mol_type="viral cRNA"
FT /note="passaged in Vero-E6 cells"
FT /db_xref="taxon:1213620"
FT gene 17. .6265
FT /gene="RdRP"
FT CDS 17. .6265
FT /codon_start=1
FT /gene="RdRP"
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="AFO66272.1"
FT /translation="METRIQDTRINFPRRDELTAEGILYHAQLDDTTLPAFSIQETESS
FT LSLEIDEVPDSVSQIGSSIALGATRIEVGQISTLVHDFTFAVVSEDTDEPLSRHFPVMN
FT DGEDHLTPDMIIDVTQTERRVVEFATHRGAGHRGVLNYFNQKMEKYKRPLALRRERTGW
FT HITLSCISVGTDHVVSDLRLPQNLVDELVYRFRFACAVMAQILVAFPGLAPQLSEEVTQ
FT NERRGIECVELLTQNLVGDGPGPKTGVFPLGEKEILDNFLMGSEDGEYLKTVFTRTFND
FT SLKEIRQEHVPEGMHRNGALRKNQGEALSQMTNLQEEMLADYSKQSRAPPENKYKSTIK
FT IPPWLIPATKRDINVCPDPDDLDGLSDETVTSRVWKSALTDTFFSGNPGWQENIDREVS
FT LASGILITEDAENLKTEFHRTKLNLTSQDWVALATRGIEGKALRHEDTVKTADEESHQT
FT LSPLSDTSGIESCLESNNWFHQARSQKEHLFQDLDQLIEASLEVSCESQGLRDSVLTTF
FT KNYRNTNAVHWACMVTQLATELSISAKQSCKKHQFILKKLPNFPVLVLIKTSRSGSHVF
FT YSLAAKASDITGELDGQVFKNYERSGAWFITEFNSVKLCKLENMIKLPMLIISMLAYFQ
FT ETEEKLVTKYSRPTLFTRKMTTLAILTCMEDKSLTEELITIQRYIQMEGFVSEPLLPKP
FT QKMLEKLSVPLRTTLQVYLFKQCMSSIRIISGSPFKRLSRGGEVVWRGCFAGCLGISCS
FT PEQMVNSWYLGYLKNKDEDTEVNMLSAMYEKIVKVEEKRPEKDDNLVGGDPINPKMHEF
FT SGSFIKFMARALDDEISQRRGKNWRQDLTAQFYRSLGSITLDQMATLKASSNFSEEWEE
FT FEESRMKEYHRVKVIERIADLVNQGHTYYTDCLGRCFKVVLEDGCMRICLFKKAQHGGL
FT REIYVLRLEERMIQFGIELLARKINEAVGHETISVPSRKEEILDTHQVRAAKACGEGTM
FT ITLCSSNDARTWNQGHYTTKFAFLMCELMPKELHGLIWASCAIFRRKKMMLNLDYLNSI
FT AKHKEGLKGFKKRLHDGFSGNDEVPWVKKGKTYILTETGMMQGILHLTSSLYHAAYQAA
FT VRKLIRTKLKTLVGCRVLIDVIEGSDDSAIIISGAVKSGEEEIRFRLAASACLLWIKHL
FT GVYAGIYMSPKSTIGCLDVCEYNSEFRFARLMCRPTFKWVCASLNIPEVEKISDRQEAF
FT ANLLTSVLEGGGTSSLCSILQMCQAWCHYILLGLWSSCVFKSIIPHLISGKNPDVGFFL
FT LDNPVCSGILGFRHNLWRFVRKTELSNIYARTLDNRALDGFVLTSGGSLSKSHLIRWGD
FT RKKLEQMKERSGLVENWQEQTDDDPSVLYKNPSTNKEVKLLLCIKIDSPGVAESLSKGN
FT VLGRVLASSVYVLQRRCITAKRSKRKYTLMELALEQDPNYRALTLAEESAIFGDIVSLE
FT KNETMSQIYSHANGVLIAKSREMRRAKVEVLSADESFRAPPVKIMGDVFFGTTRSHMGA
FT NMLNRELHYLKESFPWISNDPHDCLNQSPFSSQAEMKTFFEKLEQKTRKVRMIGAAVFT
FT RMGQTSLENLIRFNFQKNFELSKSEVSDSDYSDEDEKFCRHVVTMILSGPFTNERKECM
FT LIDFLKNSSLGPPKQLLRRSRTNVLRVVRSWLDGHARIEELVEKSMDGICGAFTIRQKV
FT FKDKKGNVSYKGLGVWTGRIEGTDCKLQIESGFASDQILKQVVIASDRSLSDFLPGLER
FT LCKELKVINPRKPFPVKEAERQNFIGALVDFRLESRFSRAGAPVLLVPQHEGFLKEMMD
FT RSDISLVVRSDVLNIRADLGDGRLITMLSYKSSGQDADSEQGNQFFSRRESLSKKFGWA
FT IREPYLSWISLGPIPDALVPRLKEEMTGRRRTEGIDGDQLRDIFKRCCKGSLRRKGLTV
FT GQYSNVRLRIEDTSEDVDIDLLELLDEDVDFGDTLQSQNIQDLEASIEEMEVLFGEDDL
FT EVFDFTEVISRSDPLAYHGFCDRIIEDYIKRLGHEAIRKAIQKRECTQSDYPLVKNLFE
FT SIGENPDELSVLPDKDDAYASSGLITEDLWG"
XX
SQ Sequence 6333 BP; 1910 A; 1291 C; 1555 G; 1577 T; 0 other;
jq956376 Length: 6333 31-JUL-2012 Type: N Check: 2924 ..
1 acacagagac gccagcatgg aaacaaggat acaagacact cgtataaact
51 tcccaaggag agatgagcta actgctgaag gtatcctgta tcatgctcag
101 ctcgatgaca caactcttcc tgccttcagc atccaagaaa cagagtcctc
151 gctttctctt gagattgatg aggtccctga tagtgtcagt cagattggca
201 gcagtatagc tttgggagca acaagaattg aagttggcca aatatctact
251 ctggtgcatg acttcacttt tgctgttgta tctgaagata cagatgagcc
301 tctctcacga cattttccag tgatgaatga tggagaagac cacctaactc
351 ctgacatgat cattgatgta acccaaacag aaagacgggt tgtggagttt
401 gccacacata ggggtgctgg tcacaggggg gttttaaact acttcaacca
451 gaaaatggag aagtacaaaa ggcctttagc cctcaggagg gagagaactg
501 gttggcacat cacattatcg tgcatttctg tgggcacaga tcatgtagtt
551 tcagatctga gacttcccca gaatttagtt gatgagctcg tctacagatt
601 tcgctttgca tgtgctgtca tggcacaaat tctagtagct ttcccaggac
651 ttgcccctca actatcagaa gaagtcaccc agaacgaaag aagagggatt
701 gagtgtgttg agctcctgac ccaaaatctg gtaggtgatg gaccagggcc
751 caaaacaggg gttttccctc ttggagagaa agaaatcctt gacaacttcc
801 taatggggag tgaggatggg gagtacctta agaccgtctt caccaggacc
851 ttcaacgata gcctgaaaga aattagacag gagcatgtgc ctgagggcat
901 gcacaggaat ggagcactca ggaaaaacca gggcgaggct ctaagtcaga
951 tgacaaacct ccaggaggaa atgctagcgg attactcaaa acagtcgaga
1001 gcaccccctg aaaacaaata caagtccact atcaagatac ctccttggct
1051 aatcccagca actaaaagag acatcaatgt atgtcctgac ccagatgatc
1101 tggatggtct ttccgacgag actgtgacct ctcgagtctg gaaaagtgca
1151 ctaacagaca ctttcttttc aggcaaccca ggatggcagg aaaatattga
1201 cagagaagtt tcattggcca gtggcatact catcacagag gatgctgaaa
1251 acctgaaaac agagttccat aggacaaagc tcaacctgac ttctcaagac
1301 tgggttgctt tagcaactag aggcattgaa ggcaaggccc tcagacatga
1351 ggatactgtg aagaccgcag atgaggagtc tcaccaaact cttagtcctc
1401 tgtcagacac ctcaggaatc gagtcctgtt tagagagtaa caactggttc
1451 catcaggctc gaagtcaaaa ggagcacttg tttcaagatc tggatcagct
1501 gatcgaggcc tcccttgagg tatcttgtga atctcaagga cttcgagact
1551 ctgttttaac caccttcaag aactacagaa acaccaatgc tgtacactgg
1601 gcttgcatgg tgacgcagct tgctactgag ctatcaatct cagctaaaca
1651 aagctgcaag aagcaccagt tcattcttaa gaagctcccc aacttccctg
1701 tgctggtcct gattaagact agcaggtcag ggtctcacgt tttttacagt
1751 ttggctgcaa aggcaagtga cattacggga gaattggatg ggcaggtgtt
1801 taaaaattat gaaagatcag gtgcctggtt cattactgaa tttaactctg
1851 tgaaactttg caagttagag aacatgatta agttgcctat gctgattatc
1901 tctatgttgg catacttcca agaaactgag gagaagctag tcacaaagta
1951 tagccgtcca actctgttta caaggaagat gaccactctg gcaatcctaa
2001 cgtgtatgga agacaaatca ctgacagaag agctcatcac catccaaaga
2051 tacattcaga tggaaggatt tgtgagtgag ccacttctac caaaacctca
2101 aaaaatgcta gagaaactgt ctgtaccatt aagaactacc cttcaagttt
2151 atcttttcaa gcaatgcatg agtagcatta gaatcatctc aggtagtcct
2201 ttcaagaggc tgtctagggg gggagaggtt gtttggagag gctgctttgc
2251 tgggtgtctg ggcattagct gttctccaga acagatggtc aactcttggt
2301 atctgggcta cttgaagaat aaggatgaag acacagaagt gaacatgctc
2351 agcgccatgt atgaaaagat tgtaaaagta gaggagaaaa gaccagaaaa
2401 ggatgacaac ctagtgggag gagacccgat caaccctaaa atgcatgagt
2451 tttcaggatc tttcatcaaa ttcatggcta gagcccttga tgatgaaatc
2501 agccagagaa gagggaagaa ctggagacag gatctgacag cacaattcta
2551 cagatctcta gggtcaataa ctctggatca gatggccacc ttgaaagcca
2601 gcagcaactt ttcagaagag tgggaagaat ttgaagaatc tcgcatgaaa
2651 gagtaccata gggtgaaagt catagagagg attgctgact tggtcaatca
2701 aggacacact tactacactg actgtcttgg taggtgcttc aaagtggtgc
2751 tagaggatgg ctgcatgagg atctgtcttt ttaagaaagc acaacatgga
2801 ggtcttagag agatttatgt tctccgacta gaagagcgca tgattcaatt
2851 tggaatcgaa cttctagcaa gaaagattaa cgaggctgtt ggtcatgaaa
2901 ccatcagtgt tccttccaga aaagaagaga tattggatac acaccaggtt
2951 agggcagcaa aagcctgcgg agaaggaacc atgatcacac tctgcagctc
3001 aaatgatgct agaacctgga accaagggca ttatactacc aagtttgcat
3051 tcctaatgtg tgagctcatg cctaaggaac tgcacggcct aatttgggcc
3101 tcatgcgcca ttttccggag gaaaaaaatg atgctcaatc tagattactt
3151 gaacagcatt gcaaagcata aagaggggct aaagggattt aagaaaaggt
3201 tgcatgacgg gttctctggg aatgatgaag ttccctgggt caagaaaggc
3251 aagacttaca tcttgactga gacaggcatg atgcaaggca tactacacct
3301 aacttccagc ctctatcatg ctgcatacca ggcagctgtt agaaagctga
3351 tccgaactaa actaaagact ctagtaggct gtagagtcct tattgatgtc
3401 attgagggtt ctgatgacag tgccatcatc atctcaggtg cagtcaagag
3451 tggagaggaa gagattagat ttagactagc agcctcagct tgtttactgt
3501 ggattaagca cttgggggta tatgcaggaa tttacatgtc cccaaaaagc
3551 accataggtt gtcttgatgt ctgtgagtac aactcagagt tcaggtttgc
3601 gagactaatg tgcaggccta cattcaaatg ggtgtgtgcc agcttgaaca
3651 tcccagaagt ggaaaagatc tcggacagac aagaagcttt tgctaatctg
3701 ctaacctcag tcttagaggg aggaggaacc tctagcctgt gctccatttt
3751 gcagatgtgt caggcttggt gtcattacat ccttttggga ctttggtcct
3801 catgtgtttt caagagcata atcccacatc taatttctgg gaaaaaccca
3851 gatgtaggat ttttcctcct tgacaaccca gtttgttctg gcattctagg
3901 ctttcgccac aacctctgga ggtttgtcag aaagactgaa ctctcaaaca
3951 tttatgccag gacactagac aaccgggcac tggacggatt tgttttgaca
4001 tcaggaggaa gcctttctaa aagccacttg attcggtggg gagataggaa
4051 gaagttggaa cagatgaagg aaagatctgg cctagtggag aactggcaag
4101 agcaaactga tgatgaccct agtgtgttgt ataagaaccc atcaaccaac
4151 aaggaggtca aacttctact ctgtataaaa attgactctc caggtgttgc
4201 tgaaagtctc tccaaaggca atgttctagg cagggttttg gcctcctcag
4251 tgtatgtgct acagagaaga tgcatcactg caaagagaag caaaagaaag
4301 tacaccctga tggaactggc cttggagcag gatccaaatt acagagcatt
4351 gactctggct gaggagtctg ccatctttgg tgacatagtg tctttggaga
4401 agaatgagac catgtcacag atttacagcc atgccaatgg ggtgctaatc
4451 gctaagtcta gagagatgag gagagctaaa gttgaggtat taagtgcaga
4501 tgagagcttt agggctcctc ctgtcaagat aatgggagat gtcttctttg
4551 gaacaacgcg cagtcacatg ggagcaaata tgctcaatag ggaactccac
4601 tacctcaaag aaagcttccc ttggatatct aatgatcccc atgactgttt
4651 gaatcagtca cccttctcaa gtcaggctga gatgaagacc ttctttgaga
4701 agctagaaca gaaaaccaga aaagttagaa tgataggagc tgctgtgttc
4751 accagaatgg gccagacatc cttggagaat ctcataaggt tcaacttcca
4801 gaagaacttt gaactcagca agagtgaagt ctctgattct gattattcag
4851 atgaagatga gaagttctgc aggcatgttg ttaccatgat cctttctggc
4901 cctttcacta atgaaaggaa agagtgcatg ctcattgact ttcttaagaa
4951 ctctagccta ggaccaccaa agcaactctt gagaagaagc aggacaaatg
5001 tactgcgggt ggttcgctcc tggcttgatg gtcatgcacg gatagaagaa
5051 ttggttgaaa agagcatgga tggcatatgt ggggccttca ccataaggca
5101 aaaggtgttc aaggacaaaa agggcaatgt gagttacaag ggattaggtg
5151 tgtggaccgg cagaattgaa ggaacagatt gcaagcttca gattgaaagt
5201 gggtttgcat ctgaccaaat cttaaaacaa gttgtcattg cctctgacag
5251 aagtctgtct gacttcctgc ccggcttgga aagactttgc aaagaactga
5301 aggtcatcaa ccccagaaaa ccttttccag taaaagaagc tgaacgtcaa
5351 aactttattg gtgccctagt tgacttcagg ctggagtcaa gattttcaag
5401 agccggagcc ccagtcctat tggtgcctca acatgaaggt ttcctcaaag
5451 agatgatgga taggtctgac ataagccttg tggtcagatc agatgtgctg
5501 aacatcagag cagatttggg agatgggaga ttgataacaa tgttgagtta
5551 caagtcctca gggcaggatg ctgattcaga acaaggcaac caatttttca
5601 gcaggagaga atcactctca aaaaagtttg gttgggctat tagagagccc
5651 tacctcagtt ggattagctt agggccaatc cctgacgctc ttgttccaag
5701 attgaaggag gaaatgacag gaaggaggag gacagaaggg attgatggag
5751 atcagctcag ggatatcttc aaaagatgct gtaagggatc acttaggcga
5801 aaaggcttga ctgttggtca gtactccaac gtaagattga gaatagaaga
5851 cacatcagag gatgtagaca ttgaccttct cgagctgcta gatgaagatg
5901 ttgactttgg agatacttta cagtcacaga acattcaaga tcttgaggct
5951 agcatagaag agatggaagt tttgtttggg gaggatgacc ttgaagtttt
6001 tgatttcact gaagtgatct caagatctga cccgttagcc taccacggat
6051 tttgtgatag aatcattgag gactacatca aaaggctagg ccatgaggcc
6101 atcagaaaag ctatccagaa gagagaatgt acccaaagtg attaccctct
6151 tgtcaagaat ctctttgaaa gcattggcga gaaccctgac gagctgtcag
6201 tgctgcctga taaagatgac gcatatgcct cttctggcct cattacagaa
6251 gacttgtggg gttgacctct ttgccctttt cttcaaatct aaactttctg
6301 tatttctcta ttaacagctg gcggtctttg tgt