Sequence of DPV Bhanja virus

Bhanja virus strain M3811 segment S, complete sequence.

ACC No: JQ956378

Dated: 2012-07-31 | Length: 1871 | CRC: -1435609850

                
ID   JQ956378; SV 1; linear; viral cRNA; STD; VRL; 1871 BP.
XX
AC   JQ956378;
XX
DT   31-JUL-2012 (Rel. 113, Created)
DT   31-JUL-2012 (Rel. 113, Last updated, Version 1)
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DE   Bhanja virus strain M3811 segment S, complete sequence.
XX
KW   .
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OS   Bhanja virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Phlebovirus;
OC   unclassified Phlebovirus.
XX
RN   [1]
RC   Publication Status: Available-Online prior to print
RP   1-1871
RX   PUBMED; 22806684.
RA   Dilcher M., Alves M.J., Finkeisen D., Hufert F., Weidmann M.;
RT   "Genetic characterization of Bhanja virus and Palma virus, two tick-borne
RT   phleboviruses";
RL   Virus Genes 0:0-0(2012).
XX
RN   [2]
RP   1-1871
RA   Dilcher M., Alves M.J., Finkeisen D., Hufert F.T., Weidmann M.;
RT   ;
RL   Submitted (18-APR-2012) to the INSDC.
RL   Department of Virology, University Medical Center Goettingen, Kreuzbergring
RL   57, Goettingen, Lower Saxony D-37075, Germany
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1871
FT                   /organism="Bhanja virus"
FT                   /segment="S"
FT                   /strain="M3811"
FT                   /mol_type="viral cRNA"
FT                   /note="passaged in Vero-E6 cells"
FT                   /db_xref="taxon:1213620"
FT   gene            29. .772
FT                   /gene="N"
FT   CDS             29. .772
FT                   /codon_start=1
FT                   /gene="N"
FT                   /product="nucleoprotein"
FT                   /protein_id="AFO66274.1"
FT                   /translation="MVAYTDILKEFGEDIIDDEVVGGLEALFAYQGFDPTRMLKKMADI
FT                   DKDGWKDDAKVIIVFALTRGNKMSKAMAKMSEEGQAKLKALKSKYRMKENPEARDDITP
FT                   TRVAAALPTWTVRAAKALQNSLPMGPDNIKALCGVDAPAEICCAAFASLIPTSELTEKQ
FT                   IEQLTHAFYLWQFYFTQLINPKVRGKGKTTVLQTFENAVKAAMNSTSYPDKSRVAFLKK
FT                   IGIFNKKNEINGSIQAMAAAWEKLE"
FT   gene            complement(912. .1853)
FT                   /gene="NSs"
FT   CDS             complement(912. .1853)
FT                   /codon_start=1
FT                   /gene="NSs"
FT                   /product="nonstructural protein"
FT                   /protein_id="AFO66275.1"
FT                   /translation="MDDSRSIQFRLSGEVSPGSLIVGGYWRMSVANIRIRDVHTLYPPV
FT                   PRELVDLFHGTAAIQTLFLDGGHMVRSLPRPIFLLETMGDILPKGRPMTSQERSSLRWP
FT                   QGVTSVSWISLALKVYGNGTPLERCYSWKALVRLLIKSTPESAPESTIADRLYDLNRKA
FT                   NIRAQRMGVLGVLSGCPILMKVGLLQVLSYLRTAAKDLELLGISTSGLVDVQVLQALGW
FT                   FYPVKLPRPIRKMVDEYIRIEASQGSNVRILLLETFDSKDRRKVNRGPPFDEASYLAEL
FT                   SCDESINYFLETQETFRIQYFNTGFTSDWPTP"
XX
SQ   Sequence 1871 BP; 546 A; 452 C; 443 G; 430 T; 0 other;

jq956378 Length: 1871  31-JUL-2012  Type: N  Check: 8080  ..

       1  acacaaagaa gccgctaacg aatcaaagat ggttgcatac actgacatcc
      51  ttaaggagtt cggtgaggat atcatcgatg atgaagttgt tggcggattg
     101  gaggcgctgt ttgcctatca gggctttgac cccaccagga tgctgaaaaa
     151  gatggcagac attgacaagg atggctggaa agatgatgct aaagtcatca
     201  ttgtgtttgc cttgacaaga ggcaacaaga tgtcaaaagc catggccaag
     251  atgtcagaag aaggccaagc gaagctgaaa gccctcaaga gcaaatacag
     301  gatgaaggag aatcctgagg caagggatga catcaccccc acaagagtgg
     351  cggctgccct gccaacttgg actgtgcgag ctgcaaaggc tctccagaac
     401  tctcttccta tggggcctga caacatcaaa gctctgtgtg gggttgatgc
     451  accagcagag atttgctgtg cagctttcgc cagcctgatt ccgaccagtg
     501  agctgacaga gaaacaaata gagcagctca cacatgcctt ttatctctgg
     551  caattctact tcacccagct gatcaaccca aaagtgaggg gcaagggtaa
     601  aaccactgtc cttcagactt ttgaaaatgc tgtgaaagca gcaatgaact
     651  caaccagcta ccctgacaaa tccagggtgg ccttcttgaa gaagatcggc
     701  atcttcaaca agaagaatga aatcaacgga agcattcagg ccatggcagc
     751  agcttgggaa aaattggaat aaagaaactc ccaagaccca atcaccaatc
     801  aggcaaaatt atgatcagat ttaattaggc taaattagat ctcttctctc
     851  tctctgtgca aaagcacaga gagggggaag ggatcaaatg ggtggggagt
     901  cttttctaag cttagggggt aggccaatca gaagtgaagc cagtattgaa
     951  gtattggatc ctgaatgtct cctgggtctc aaggaaatag tttatggact
    1001  catcacaact caactcagct agataagagg cctcatcaaa aggtggacct
    1051  ctattaacct ttctgcgatc ctttgagtca aaggtctcta atagcagaat
    1101  tcgaacattg gagccttgac tagcttcgat cctgatgtat tcatcaacca
    1151  tcttcctaat tggccggggc agttttactg ggtaaaacca gcccaaagcc
    1201  tggagtacct gcacatcaac aagtccagaa gttgaaatcc caagcaactc
    1251  cagatccttt gctgctgtcc tgaggtaaga taggacctgt agcaggccca
    1301  ccttcatcaa gatgggacac ccactgagga cacccaaaac acccattctt
    1351  tgggctctaa tgttggcctt tcggttcaaa tcatagagcc tgtcagcaat
    1401  ggtgctttca ggggctgatt caggagttga cttgatgagc agcctgacta
    1451  gggctttcca agagtagcat ctctccaaag gagtcccgtt cccatacacc
    1501  ttcaatgcaa gagaaatcca ggaaactgag gtgactcctt gaggccatct
    1551  cagagagctc ctctcctgac tagtcatagg ccttcctttt ggcagaatgt
    1601  ctcccatagt ctccagaagg aagataggcc taggcagaga tctcaccata
    1651  tggcctccat caaggaaaag agtttggata gccgcagtac catggaacag
    1701  atctaccagc tcccttggta ctgggggata caatgtgtga acatcccgta
    1751  tacggatgtt cgccactgac atcctccagt atcctcccac aatcaaggat
    1801  ccaggtgaaa cctcaccaga caacctaaac tgtatagatc tactgtcgtc
    1851  cattctgcgg cttctctgtg t